PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015119t1
Common NameTCM_015119
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 324aa    MW: 36001.2 Da    PI: 5.0239
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015119t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35291192101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll
  Thecc1EG015119t1  29 FLTKTYQLVDDHTIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLL 112
                       9*****************************************************************99.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Thecc1EG015119t1 113 CEIQRRK 119
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-3819113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.25E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAPPPVEQNG EETTAAAAGE SQRSVPTPFL TKTYQLVDDH TIDDVISWND DGSTFIVWNP  60
TVFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCEIQRRKI  120
MMPTTAAITV STMTAIPIAK PIISPSNSGD EQSPVISSTS SPSRPGQTGS VTAELREENE  180
KLRKENVQLN KQLAEMKSLC NNIFNLMSNY ASSQSESSFA ATKPLDLLPV KRLSEEGEDE  240
ETSPRLFGVP IGGVKRAREV GESLAAEDET QLQLQQPGGS GTASEMIKSE PLDRQNAGCD  300
DERGNQDTPW LRQFHRANQR VCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241611819129Heat shock factor protein 1
5d5v_B1e-241611819129Heat shock factor protein 1
5d5v_D1e-241611819129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038632.20.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-101HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A061G1750.0A0A061G175_THECC; Heat shock transcription factor B2A, putative
STRINGEOY231330.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-86heat shock transcription factor B2A
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]