PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015107t2

Common Name

TCM_015107

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 892aa MW: 102940 Da PI: 6.5501

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015107t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.3e-26	75	161	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ +GFsvrk+ ++sk +g++++r+f+Cskeg+r++++++ ++ +++r+etrtgC a++ ++++ +gk++v+++e +HnH+ Thecc1EG015107t2 75 RFYNKYARLLGFSVRKDWVNRSKIHGQVVSRKFTCSKEGYRRKDQRD-VNVKKHRKETRTGCLAHMIITRQPNGKYRVSHFEANHNHD 161 5******************************************99.999**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-24	75	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-25	284	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	564	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	575	602	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.9E-4	577	600	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MNRDADDLGN LHDEDADNRA QTSDKLDLNV EHNCRSPKVN PVHTTQSSLP SKGETNADGV 60 LKIGIEFDSD EHAYRFYNKY ARLLGFSVRK DWVNRSKIHG QVVSRKFTCS KEGYRRKDQR 120 DVNVKKHRKE TRTGCLAHMI ITRQPNGKYR VSHFEANHNH DNINPNNEQT LQLQKELCFA 180 QASETDKPNN SETQNAAFDL MRRRFLVRES LDCLAEDYDN HLRSERVRDM KEGEAGHLLR 240 YFLRQHFENP SVFYAIQLDI DDKVSNIFWA DDNMVVDYNY FGDVVCLDTS CRTNKDLKPF 300 VQFIGVNHHN QVVIFAAALL YDDTVESLKW LFHTFLEAMS GKKPKVILTD QDATVVEAIS 360 SVLPETSHHI CVWQMHRNAL KHLSYVQKDA EAFANDFRSC IYDHKDENDF IHAWEAMLEI 420 YNLKQNEWLK WMYREREKWA VVYDRNTFFI DMKCSHLGES LSNKLRRHLN SDQDVLQFFK 480 HFERVVDEQR YKEIEASDEM SHCKPKLMGN VILLKHASEI YTPKAFEVFQ CEYEKCLNVV 540 ANQCSQNGYL SEYKVNTFGQ SQEYTVTFDS SDDTVICSCM KFEYVGFLCS HALRVLDHRN 600 IKVVPSRYIL RRWTKDARIG CAREDSDFII QENPKLVAAR RYRDMCRCIL NISARAAESD 660 DAFHFASRQL NEIIVGLEKI LTLKAEEAQV IASSSSGASA SDSENAEIFL DGHAIEDQDE 720 SSRVQSKKEN EAVVPHRQKQ KNVPERGSKT KGVQNKRSNS PNTITSISSP SPTYVSPQAS 780 GPAPVMQGLF NFEANQVVQC IYQQPNMVME QEPNAEMYQQ PNFYTDQHDS PSQTQLLQEP 840 LIRSTYQESA SNSTHLRPWN LTSNLHIHLH FCFMITDTEL LTLHFLGPSK G*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MNRDADDLGN LHDEDADNRA QTSDKLDLNV EHNCRSPKVN PVHTTQSSLP SKGETNADGV  60
LKIGIEFDSD EHAYRFYNKY ARLLGFSVRK DWVNRSKIHG QVVSRKFTCS KEGYRRKDQR  120
DVNVKKHRKE TRTGCLAHMI ITRQPNGKYR VSHFEANHNH DNINPNNEQT LQLQKELCFA  180
QASETDKPNN SETQNAAFDL MRRRFLVRES LDCLAEDYDN HLRSERVRDM KEGEAGHLLR  240
YFLRQHFENP SVFYAIQLDI DDKVSNIFWA DDNMVVDYNY FGDVVCLDTS CRTNKDLKPF  300
VQFIGVNHHN QVVIFAAALL YDDTVESLKW LFHTFLEAMS GKKPKVILTD QDATVVEAIS  360
SVLPETSHHI CVWQMHRNAL KHLSYVQKDA EAFANDFRSC IYDHKDENDF IHAWEAMLEI  420
YNLKQNEWLK WMYREREKWA VVYDRNTFFI DMKCSHLGES LSNKLRRHLN SDQDVLQFFK  480
HFERVVDEQR YKEIEASDEM SHCKPKLMGN VILLKHASEI YTPKAFEVFQ CEYEKCLNVV  540
ANQCSQNGYL SEYKVNTFGQ SQEYTVTFDS SDDTVICSCM KFEYVGFLCS HALRVLDHRN  600
IKVVPSRYIL RRWTKDARIG CAREDSDFII QENPKLVAAR RYRDMCRCIL NISARAAESD  660
DAFHFASRQL NEIIVGLEKI LTLKAEEAQV IASSSSGASA SDSENAEIFL DGHAIEDQDE  720
SSRVQSKKEN EAVVPHRQKQ KNVPERGSKT KGVQNKRSNS PNTITSISSP SPTYVSPQAS  780
GPAPVMQGLF NFEANQVVQC IYQQPNMVME QEPNAEMYQQ PNFYTDQHDS PSQTQLLQEP  840
LIRSTYQESA SNSTHLRPWN LTSNLHIHLH FCFMITDTEL LTLHFLGPSK G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972886.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A061G150	0.0	A0A061G150_THECC; FAR1-related sequence 5 isoform 2
STRING	EOY23112	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG015107t2
Entrez Gene	18605511

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]