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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015083t1 | ||||||||
Common Name | TCM_015083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 292aa MW: 30860.2 Da PI: 5.1418 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.3e-15 | 121 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+ +l+g Thecc1EG015083t1 121 TYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAAIALKG 169 69***6..678*********843...5***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-26 | 121 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.823 | 121 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-17 | 121 | 178 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-28 | 121 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.39E-27 | 122 | 178 | No hit | No description |
Pfam | PF00847 | 5.1E-9 | 122 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MFGFVKSSAN SPRLCPLTNM ANPSTNVPPK DQPPSTPTVQ IPDPPASLVQ PQDQSPKPSS 60 ASPPDNPLVR LVHSPGRTTL GQPQDQSPKS PKPSTVSTPR PVQSPGRSSS SALPGSGRHP 120 TYRGIRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAATAY DVAAIALKGP DTDLNFPDMI 180 LSYPKAASTS ASDIRAAAAS AAASRLPKPD TGSSKDSKQD QGEPENEGTT SGSCMESGSG 240 QEFIDEEALL NFPNLLVNMA EGMLISPPRI NSPPSDDSPE DSDVESLWTY T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 119 | 177 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ224383 | 1e-146 | DQ224383.1 Gossypium hirsutum DRE-binding protein 3b (DBP3b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973036.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9FJ90 | 3e-53 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A061FZV7 | 0.0 | A0A061FZV7_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOY23085 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015083t1 |
Entrez Gene | 18605492 |
Publications ? help Back to Top | |||
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