PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015037t2

Common Name

TCM_015037

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 963aa MW: 107540 Da PI: 7.5406

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015037t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.7	8.1e-10	214	279	16	82
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 ++ ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e+++++e++ +yf Thecc1EG015037t2 214 DVAVQSTRGKTRADKDKEVAEFLNRHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEKEQV-GKSYF 279 556677889999*******************************************976665.44455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00180	2.30E-13	814	949	No hit	No description
SuperFamily	SSF56112	2.52E-15	814	948	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.7E-6	817	948	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016310	Biological Process	phosphorylation
GO:0016301	Molecular Function	kinase activity

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MGDTKGDTTK KPTPQQTQQL SSSPKESLEE SSESRQKHLQ QQSAVVVTGA PFISAPLYVP 60 IGATSSPFEQ QFESVNPKRP RYNSGQWKLL PSPSSLQTQA QMAIITSESS PSPTTNPKNP 120 QTQAHTTAAS SSDTASSPPH SPLPSTTSGQ ETNKPEGEQF HHQFRKGKYV SPVWKPNEML 180 WLARAWRIQY QGGSDASGSS RIGHQETSHV AGSDVAVQST RGKTRADKDK EVAEFLNRHG 240 INRDAKTAGT KWDNMLGEFR KVYEWERGGE KEQVGKSYFR LSPYERKLHR LPASFDEEVF 300 EELSQFMGPR MRTSQSRASA IASGDDGRPV ISGSRALPPP PPFKEDELPP SVRTKQLVTT 360 SGGDAFFHGT RGSLLGFDNS LDVSVGLPSS SSKEPRRIGK IRMAWEESVS LWAEEGEHHR 420 GRVRLQGSSF LNADELTFFD DTMVACTIEA FEDGPLKGFS VDRFVNGQQV KVFGRRKSST 480 ASASSAMPPL EFQDPTDYYV GCLRVPPTTL PSLFELSWHL QEPPPEEYRF HLRKDVYRDL 540 PPGKEVLFTT SNELLDCRAI IYDILSPIIR TNPSLSAATA ASRDSFIGLW DDCINRVVSK 600 FCSVEMVIIR KPSSSSSTEP LQDQWPNVTG FVRNFCLWRG EETDQLRESQ LDPPSSIVEK 660 LLWTYMDLPY ILGYYAVGYM VTFCALSRSQ DRIIRTDLYS VDLSSPSERL KALAPCCRIA 720 GLLPLLADRC FSNVNNIGSY KQFPFSDFER IDMGNGNIME MTPNTVIRSF SSRKKWAAVK 780 EIYDILDHRI PHAEFICRAS EKDLTLVFKP RGCKFKPVNC DQLVEALKYV TKALVALHDL 840 CFMHRDLSWD KVLRRSDREN EWFVCGFDEA VGAPQIYPQA VAGAEARGRH APEMGRGLHG 900 VKVDVWGVGH LVKTCGLTNV PKMLRELQNR CLDQNPEQRP TAADCYHHLL QVQSASSSGA 960 PY*

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MGDTKGDTTK KPTPQQTQQL SSSPKESLEE SSESRQKHLQ QQSAVVVTGA PFISAPLYVP  60
IGATSSPFEQ QFESVNPKRP RYNSGQWKLL PSPSSLQTQA QMAIITSESS PSPTTNPKNP  120
QTQAHTTAAS SSDTASSPPH SPLPSTTSGQ ETNKPEGEQF HHQFRKGKYV SPVWKPNEML  180
WLARAWRIQY QGGSDASGSS RIGHQETSHV AGSDVAVQST RGKTRADKDK EVAEFLNRHG  240
INRDAKTAGT KWDNMLGEFR KVYEWERGGE KEQVGKSYFR LSPYERKLHR LPASFDEEVF  300
EELSQFMGPR MRTSQSRASA IASGDDGRPV ISGSRALPPP PPFKEDELPP SVRTKQLVTT  360
SGGDAFFHGT RGSLLGFDNS LDVSVGLPSS SSKEPRRIGK IRMAWEESVS LWAEEGEHHR  420
GRVRLQGSSF LNADELTFFD DTMVACTIEA FEDGPLKGFS VDRFVNGQQV KVFGRRKSST  480
ASASSAMPPL EFQDPTDYYV GCLRVPPTTL PSLFELSWHL QEPPPEEYRF HLRKDVYRDL  540
PPGKEVLFTT SNELLDCRAI IYDILSPIIR TNPSLSAATA ASRDSFIGLW DDCINRVVSK  600
FCSVEMVIIR KPSSSSSTEP LQDQWPNVTG FVRNFCLWRG EETDQLRESQ LDPPSSIVEK  660
LLWTYMDLPY ILGYYAVGYM VTFCALSRSQ DRIIRTDLYS VDLSSPSERL KALAPCCRIA  720
GLLPLLADRC FSNVNNIGSY KQFPFSDFER IDMGNGNIME MTPNTVIRSF SSRKKWAAVK  780
EIYDILDHRI PHAEFICRAS EKDLTLVFKP RGCKFKPVNC DQLVEALKYV TKALVALHDL  840
CFMHRDLSWD KVLRRSDREN EWFVCGFDEA VGAPQIYPQA VAGAEARGRH APEMGRGLHG  900
VKVDVWGVGH LVKTCGLTNV PKMLRELQNR CLDQNPEQRP TAADCYHHLL QVQSASSSGA  960
PY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038524.2	0.0	PREDICTED: uncharacterized protein LOC18605455 isoform X2
TrEMBL	A0A061FZQ3	0.0	A0A061FZQ3_THECC; Kinase superfamily protein isoform 2
STRING	EOY23024	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015037t2
Entrez Gene	18605455

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]