PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015037t1

Common Name

TCM_015037

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 979aa MW: 109375 Da PI: 7.5407

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015037t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.7	8.3e-10	214	279	16	82
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 ++ ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e+++++e++ +yf Thecc1EG015037t1 214 DVAVQSTRGKTRADKDKEVAEFLNRHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEKEQV-GKSYF 279 556677889999*******************************************976665.44455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00180	2.35E-13	830	965	No hit	No description
SuperFamily	SSF56112	2.52E-15	830	964	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.8E-6	833	964	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016310	Biological Process	phosphorylation
GO:0016301	Molecular Function	kinase activity

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence Send to blast
MGDTKGDTTK KPTPQQTQQL SSSPKESLEE SSESRQKHLQ QQSAVVVTGA PFISAPLYVP 60 IGATSSPFEQ QFESVNPKRP RYNSGQWKLL PSPSSLQTQA QMAIITSESS PSPTTNPKNP 120 QTQAHTTAAS SSDTASSPPH SPLPSTTSGQ ETNKPEGEQF HHQFRKGKYV SPVWKPNEML 180 WLARAWRIQY QGGSDASGSS RIGHQETSHV AGSDVAVQST RGKTRADKDK EVAEFLNRHG 240 INRDAKTAGT KWDNMLGEFR KVYEWERGGE KEQVGKSYFR LSPYERKLHR LPASFDEEVF 300 EELSQFMGPR MRTSQSRASA IASGDDGRPV ISGSRALPPP PPFKEDELPP SVRTKQLVTT 360 SGGDAFFHGT RGSLLGFDNS LDVSVGLPSS SSKEPRRIGK IRMAWEESVS LWAEEGEHHR 420 GRVRLQGSSF LNADELTFFD DTMVACTIEA FEDGPLKGFS VDRFVNGQQV KVFGRRKSST 480 ASASSGFIDR AQLPFAEPPI RPMPPLEFQD PTDYYVGCLR VPPTTLPSLF ELSWHLQEPP 540 PEEYRFHLRK DVYRDLPPGK EVLFTTSNEL LDCRAIIYDI LSPIIRTNPS LSAATAASRD 600 SFIGLWDDCI NRVVSKFCSV EMVIIRKPSS SSSTEPLQDQ WPNVTGFVRN FCLWRGEETD 660 QLRESQLDPP SSIVEKLLWT YMDLPYILGY YAVGYMVTFC ALSRSQDRII RTDLYSVDLS 720 SPSERLKALA PCCRIAGLLP LLADRCFSNV NNIGSYKQFP FSDFERIDMG NGNIMEMTPN 780 TVIRSFSSRK KWAAVKEIYD ILDHRIPHAE FICRASEKDL TLVFKPRGCK FKPVNCDQLV 840 EALKYVTKAL VALHDLCFMH RDLSWDKVLR RSDRENEWFV CGFDEAVGAP QIYPQAVAGA 900 EARGRHAPEM GRGLHGVKVD VWGVGHLVKT CGLTNVPKML RELQNRCLDQ NPEQRPTAAD 960 CYHHLLQVQS ASSSGAPY*

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence Send to blast

MGDTKGDTTK KPTPQQTQQL SSSPKESLEE SSESRQKHLQ QQSAVVVTGA PFISAPLYVP  60
IGATSSPFEQ QFESVNPKRP RYNSGQWKLL PSPSSLQTQA QMAIITSESS PSPTTNPKNP  120
QTQAHTTAAS SSDTASSPPH SPLPSTTSGQ ETNKPEGEQF HHQFRKGKYV SPVWKPNEML  180
WLARAWRIQY QGGSDASGSS RIGHQETSHV AGSDVAVQST RGKTRADKDK EVAEFLNRHG  240
INRDAKTAGT KWDNMLGEFR KVYEWERGGE KEQVGKSYFR LSPYERKLHR LPASFDEEVF  300
EELSQFMGPR MRTSQSRASA IASGDDGRPV ISGSRALPPP PPFKEDELPP SVRTKQLVTT  360
SGGDAFFHGT RGSLLGFDNS LDVSVGLPSS SSKEPRRIGK IRMAWEESVS LWAEEGEHHR  420
GRVRLQGSSF LNADELTFFD DTMVACTIEA FEDGPLKGFS VDRFVNGQQV KVFGRRKSST  480
ASASSGFIDR AQLPFAEPPI RPMPPLEFQD PTDYYVGCLR VPPTTLPSLF ELSWHLQEPP  540
PEEYRFHLRK DVYRDLPPGK EVLFTTSNEL LDCRAIIYDI LSPIIRTNPS LSAATAASRD  600
SFIGLWDDCI NRVVSKFCSV EMVIIRKPSS SSSTEPLQDQ WPNVTGFVRN FCLWRGEETD  660
QLRESQLDPP SSIVEKLLWT YMDLPYILGY YAVGYMVTFC ALSRSQDRII RTDLYSVDLS  720
SPSERLKALA PCCRIAGLLP LLADRCFSNV NNIGSYKQFP FSDFERIDMG NGNIMEMTPN  780
TVIRSFSSRK KWAAVKEIYD ILDHRIPHAE FICRASEKDL TLVFKPRGCK FKPVNCDQLV  840
EALKYVTKAL VALHDLCFMH RDLSWDKVLR RSDRENEWFV CGFDEAVGAP QIYPQAVAGA  900
EARGRHAPEM GRGLHGVKVD VWGVGHLVKT CGLTNVPKML RELQNRCLDQ NPEQRPTAAD  960
CYHHLLQVQS ASSSGAPY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038523.2	0.0	PREDICTED: uncharacterized protein LOC18605455 isoform X1
TrEMBL	A0A061G7K8	0.0	A0A061G7K8_THECC; Kinase superfamily protein isoform 1
STRING	EOY23024	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015037t1
Entrez Gene	18605455

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]