PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015035t1
Common NameTCM_015035
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 244aa    MW: 27073.6 Da    PI: 9.0173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015035t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-1173124255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       + + +e+Er+RR+++ + + +Lr+llP  +    ++K   ++   +Av+YIk+L+
  Thecc1EG015035t1  73 KIMRKEIERQRRQQMAKLYGKLRSLLPLeS---IQGKRAVSDHMNEAVNYIKYLK 124
                       66789***********************66...99******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-1269138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.95771123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-872128No hitNo description
PfamPF000103.6E-874123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-975139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-477129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFPSHQSDDF LYEISDIPHY QDLMQQNLTI SGEGSAGGSN LTQRMAKGKR HKKFVAAANS  60
NDGNAAANND AKKIMRKEIE RQRRQQMAKL YGKLRSLLPL ESIQGKRAVS DHMNEAVNYI  120
KYLKKKIQEL SVKRDKLKKL SNLSAFDQGS ASSSDNSSLI NCVAVHPYRG GVEIVINSGF  180
GDESWHLSAM MQAIRAEELD VVHCISSQTN EGFLHTIQSE VSDPAHRLDL PGLQSKLNDL  240
ISF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139DKLKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038521.20.0PREDICTED: transcription factor bHLH36
TrEMBLA0A061G1D21e-180A0A061G1D2_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY230220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17143711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.16e-37bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]