PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015033t1
Common NameTCM_015033
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 276aa    MW: 30729.2 Da    PI: 8.2115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015033t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-1374124355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       + h e+Er+RR+++ s ++ Lr+llP       ++K s ++   +Av+YIk+L+
  Thecc1EG015033t1  74 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 124
                       67*************************77...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.09E-1271128No hitNo description
PROSITE profilePS5088814.41871123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1472140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-1174124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1175139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-677129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFPLQQGDDL VYQIFFNSNQ HKIPQDLITD HASLEGTPIP IIGSSMGKSQ RRKVCHMEST  60
STQAFTCDKY KKQKLHREIE RQRRQDMASL YASLRSLLPG EYIKGKRSMS DHMNEAVNYI  120
KHLEKKVKDL DVKRDELKRV SNLAALGSGT ESSNHCFIIR PCLIGIEIMF RCGFEEQGLP  180
LSRVLAALVD EGLPVVSCIS TKSEEYLLHT IQTEVNDPTS FNLSGLQQKL AKNCVASSCS  240
PNETARVGCR QITWTVAICI STSTLGNDGQ SCKNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15073RRKVCHMESTSTQAFTCDKYKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973035.10.0PREDICTED: transcription factor bHLH118
TrEMBLA0A061FZP80.0A0A061FZP8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY230200.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-44bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]