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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014850t1 | ||||||||
Common Name | TCM_014850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25221.5 Da PI: 5.2175 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 103 | 154 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps k r++lg+f + +Aaka++ a+ k++g+ Thecc1EG014850t1 103 HYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFESDVDAAKAYDCAAFKMRGH 154 7********.**********854..34**********99**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-31 | 102 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 103 | 162 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 103 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 103 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-35 | 103 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-13 | 104 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-21 | 111 | 161 | No hit | No description |
PRINTS | PR00367 | 6.6E-13 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MATIEESTTL EFIRQHLLGD FASADAFITS LDFGLSQLQP IIKPENPIPE LEHDSPISDP 60 NNQIPDIFSC DVKPEVVDLE SPRSIISVYN PEPKLSLCEE RRHYRGVRRR PWGKFAAEIR 120 DPSRKGSRVW LGTFESDVDA AKAYDCAAFK MRGHKAILNF PLEAGEAGPP ASTGRKRRRV 180 NGIKLPECDV MSPESIELAW EVKEEEGEPH YLNQLSPLTR RQVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 102 | 162 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-28 | 102 | 162 | 4 | 64 | ATERF1 |
3gcc_A | 2e-28 | 102 | 162 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 178 | RKRRR |
2 | 175 | 179 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007038277.2 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF107 | ||||
Swissprot | Q9LY05 | 6e-56 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A061G087 | 1e-164 | A0A061G087_THECC; Ethylene-responsive element binding factor, putative | ||||
STRING | EOY22778 | 1e-165 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3229 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 7e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014850t1 |
Entrez Gene | 18605291 |
Publications ? help Back to Top | |||
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