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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014743t1 | ||||||||
Common Name | TCM_014743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARF | ||||||||
Protein Properties | Length: 857aa MW: 95244.8 Da PI: 6.6113 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 3e-23 | 160 | 261 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + Thecc1EG014743t1 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 249 99*****************************7333.34459************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+v+r+ Thecc1EG014743t1 250 ENGDLRVGVRRA 261 88889****996 PP | |||||||
2 | Auxin_resp | 118.8 | 4.4e-39 | 286 | 368 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha +t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk Thecc1EG014743t1 286 AWHAYTTRTIFTVYYKPRTSPAEFIVPFDQYVESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDCDPKRWQDSKWRCLK 368 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.72E-41 | 156 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 157 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-21 | 158 | 260 | No hit | No description |
SMART | SM01019 | 5.8E-23 | 160 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-21 | 160 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.871 | 160 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-35 | 286 | 368 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.23E-11 | 730 | 814 | No hit | No description |
PROSITE profile | PS51745 | 23.582 | 734 | 818 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.8E-6 | 782 | 819 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MTTSEVSIKG NCVNGRGESF SSGYSEPNDA RSTMEGQNGH STRPAAVRDP ETALYTELWH 60 ACAGPLVTVP REGERVFYFA QGHIEQVEAS TNQVADQQMP VYDLPSKILC RVINVQLKAE 120 PDTDEVFAQV TLLPEPNQDE NTVDKEPPIP PPPRFHVHSF CKTLTASDTS THGGFSVLRR 180 HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA 240 GDAFIFLRGE NGDLRVGVRR AMRQQSNVPS SVISSHSMHL GVLATAWHAY TTRTIFTVYY 300 KPRTSPAEFI VPFDQYVESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDCDPKRWQ 360 DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRPRS NAVPSSPDSS 420 VLTREGSSKV TVDPSPGSGF SRVLQGQEFS TLRGNFAESN ESDTAEKSVI WPPSVDDEKI 480 DVVSASRRFG SENWMSSGRH EPTYTDLLSG FGLNADSSHG YCPPLADQTL AAGNPIRKQL 540 LDKEGKLGSW SLMPSGLSLK LVDNNAKPTL QGSDMPYQAR GNGRFSGFGE YPILQGHRIE 600 PSHGNWLMPP PTSSHFESPA HSRDLISKTS SVQEHEAGKS REGNCKLFGI PLISNSVSSE 660 SAVSHINVLN KPVNHMQPSS HQVRAFESDQ KFEKSKVSQL PEDLSAFNEQ DKTFQLGQPH 720 TREIQSKPPS VSTRSCTKVH KQGIALGRSV DLTKFNNYEA LIAELDQLFD FGGELMAPRR 780 GWLVVYTDDE GDMMLVGDDP WQEFCAMVRK IGIYTREEVQ KMKPGSLSSK GEDNPVSAEE 840 LDAKEVKCPG FSAENC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 34 | 390 | 1 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 34 | 390 | 1 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 34 | 390 | 1 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973154.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A061G6G4 | 0.0 | A0A061G6G4_THECC; Auxin response factor | ||||
STRING | EOY22619 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014743t1 |
Entrez Gene | 18605192 |