PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014661t1
Common NameTCM_014661
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 32062.9 Da    PI: 10.9898
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014661t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien + rqvtfskRrng+lKKA+ELS+LCdaeva++ifsstgk y ++s
  Thecc1EG014661t1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSTGKAYQFAS 59
                      79**********************************************986 PP
2K-box53.69.7e-19841501278
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                       +++e ++ e++ Lk+ i++L+  ++hl GedL sL +++L+qLe+qL+ +++++Rs+K + l+ + +
  Thecc1EG014661t1  84 RTMEFWRSEIEELKRSINTLEARLKHLSGEDLLSLGMRDLKQLERQLKIGVERVRSRKVQTLIHSHR 150
                       56899*******************************************************9986654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.436161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-31276IPR002100Transcription factor, MADS-box
CDDcd002652.62E-37270No hitNo description
PRINTSPR004044.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1485170IPR002487Transcription factor, K-box
PROSITE profilePS5129711.91486202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRGKVEMKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSS TGKAYQFASH  60
DMDRSIGKYR SEVGLPDSSN PQFRTMEFWR SEIEELKRSI NTLEARLKHL SGEDLLSLGM  120
RDLKQLERQL KIGVERVRSR KVQTLIHSHR RIVSDHATLL KRREDMVRQR HTPCRRPVEI  180
LHKELHEDNT RLQKRLKELH DGNLSSTIVG ENVCSMFQQR EKLLHITASN RKEGYVSTIG  240
ISNQNRLRKT SKQVKELTLD QSPLSRLKRF RTPDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-23179178MEF2C
5f28_B4e-23179178MEF2C
5f28_C4e-23179178MEF2C
5f28_D4e-23179178MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364521e-137HM236452.1 Gossypium hirsutum MADS36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038007.11e-132PREDICTED: MADS-box transcription factor 23 isoform X2
TrEMBLA0A061G0050.0A0A061G005_THECC; K-box region and MADS-box transcription factor family protein isoform 1
STRINGEOY225070.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-45AGAMOUS-like 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]