PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014550t1
Common NameTCM_014550
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 496aa    MW: 55130.6 Da    PI: 4.8269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014550t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12157179426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       e C ++++tG Ck+G++CkF+H+
  Thecc1EG014550t1 157 EDCAYYMKTGLCKFGSNCKFNHP 179
                       89********************9 PP
2zf-CCCH30.75.4e-10203227327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       + +C++++rtG Ck+G  C+++H++
  Thecc1EG014550t1 203 QTECKYYLRTGGCKFGKACRYNHSR 227
                       568********************95 PP
3zf-CCCH39.87.8e-13248272226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C++++r+G CkyG++C+F+H+
  Thecc1EG014550t1 248 GEKECPYYMRNGSCKYGANCRFNHP 272
                       7899********************9 PP
4zf-CCCH28.52.6e-09382408127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f++tG Ck+ ++Ck++H++
  Thecc1EG014550t1 382 PGQPECSYFMKTGDCKFKSNCKYHHPK 408
                       5789*********************96 PP
5zf-CCCH36.21e-11429453226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C++++r+G+Ck+G+ CkF H+
  Thecc1EG014550t1 429 DQSICSHYSRYGICKFGPACKFDHS 453
                       6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.314153181IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6153180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6153181IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10157179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5159178IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784200228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6203229IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8204227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4206227IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324246274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6248274IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10248272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5252271IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4381408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202381409IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-7383408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5385410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6425453IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4427454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258427455IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9429453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4431454IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MRHYYFFQVE IYSCNKWVLK CGLTMSQSEE TPISDSTPTD SALHLGLHSL DPDPSPNPDP  60
SPSDLNHSAQ ETDHDQSNLE QQLQNLDLKE EEGEEEEGDE EAEKKDDRDR ESDNEADVDA  120
AGDDEDEVEE KNEYEDDDEN VTNEGRRSHY PVRPEAEDCA YYMKTGLCKF GSNCKFNHPV  180
RRKNQAVKEK VKEKDESTEK PSQTECKYYL RTGGCKFGKA CRYNHSRAKT AVAPILELNF  240
LGLPIRPGEK ECPYYMRNGS CKYGANCRFN HPDPTTAGAC DPPSGYGNGG PVSSQAASQV  300
NIASWSSPRT LNETPYMPMM FSPTQGVPPP NPEWNGYQTT VYAPERNLHP TPAYVMNNPS  360
TETAVYTHHQ PQMLVDEFPV RPGQPECSYF MKTGDCKFKS NCKYHHPKNR VAKPSPCTLS  420
DKGLPLRPDQ SICSHYSRYG ICKFGPACKF DHSVQAAPSV VSGLDQPLPF SNSAATEESG  480
IAGSNGTDTA VQQSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972830.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM41e-144C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A061FXU40.0A0A061FXU4_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRINGEOY223600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-141C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]