PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014419t1 | ||||||||
Common Name | TCM_014419 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 1079aa MW: 122039 Da PI: 6.0659 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.3 | 8.7e-25 | 653 | 710 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKY K +kg++++r+YY+C ++gCpvkk v r+++d+++++ tYeg Hnhe Thecc1EG014419t1 653 EDGYRWRKYRTKIIKGNPHSRNYYKCLTRGCPVKKMVARDSQDTSFLVLTYEGIHNHE 710 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 1.6E-29 | 12 | 191 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.4E-22 | 35 | 191 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 6.7E-8 | 51 | 111 | IPR001611 | Leucine-rich repeat |
Gene3D | G3DSA:3.80.10.10 | 3.8E-8 | 251 | 485 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 1.6E-29 | 343 | 488 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:2.20.25.80 | 2.0E-26 | 640 | 712 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.944 | 647 | 712 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-22 | 647 | 712 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-26 | 652 | 711 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-20 | 653 | 710 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1079 aa Download sequence Send to blast |
MHTSTRMQQS VLNESGSGLT QLQKEEVWAG KRVHFMNDNK VSELPPSPNC PSLIELYLQW 60 NYELTAIPPL FFQRIALLQV LDLSHTSIKC LPKSLPKLVA LKKLLLRCCQ LFMELSPLVG 120 KLSNLEELDL DETQIMDMPR EIGKLLKLRH LRVSFYQICG KKKSKLNIVI HPETISNLSQ 180 LTLLSIDVNP TDKRWDDSVE AVVKEVCNSK TLMTLSLYLP KFQLLDCISS LYPSLSGFRF 240 IVGHHKRRII SRVPREVEAE FRNWDKCLKF VNGENIPIEI KGVLKYSTSF FLDQHATALN 300 LSEFGIENMK RLKFCLLVDC NKMETIIDGE RHYDGNEDDP SESDPSPVEN VLESLEYLSI 360 YYMENLGSIW RGTSHYGCMS KLKFLALHTC PRLINIFSHT LLGNFVNLEE FILEDCPLVT 420 SLVSHASVKP MMADKFLPSL KRLLLLYLPE LVSISYGLLI APKLETIGFY NCPKLKSISK 480 MELSSKTLKI IKGELQWWED MKWNEAEWGN RPDYLVHIFS PIDKEKDVMT QLAEDGDLFE 540 ATMQNEGQQL GNCGSLLSDY MEETVTGTDV TESISSAPKQ AWSFSSEKNK RLEDDYFDLA 600 PETGDVDDDE DGPKDKRWNC TENENKGVIG FASKIVSGDR TEFRKKTNME ILEDGYRWRK 660 YRTKIIKGNP HSRNYYKCLT RGCPVKKMVA RDSQDTSFLV LTYEGIHNHE QPFFKVLNNV 720 EDAAEAAKTI SPTKGYRDVL EASIQDKGLH SGIPEASVRD ESQQSASRNS RMVSELSRMR 780 LQDGYVSYPW ERRMRDVLSV PNSSCFLSIL LLPKASDRVA SQYNDLEDTF TRANAWLNAS 840 QASGVPIVFM NIQTESLLTK FSGETASSAV NAGSLSDLSN LANASLYGFE DYHGVDIGVV 900 RAVRLWYAPL AGEIPIEIKL KEDDTKLGFA ISRTEEGFIY ISSVMDDDEN VPSTRSGLSN 960 LYKESVSASR LLVVSRLSNQ KVLPWMVSST GAVRCFDTVS LSQKLSLLRH VHMPILMHVF 1020 LWDQSVVSRG FGSARLRIPS PSVLPLPPKV RLAHQPNDDN QILPLPPEEP NESIVTGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 640 | 712 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021285514.1 | 0.0 | disease resistance protein At4g27190-like | ||||
TrEMBL | A0A061FXH2 | 0.0 | A0A061FXH2_THECC; Uncharacterized protein | ||||
STRING | EOY22200 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19759 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-25 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014419t1 |
Entrez Gene | 18604928 |
Publications ? help Back to Top | |||
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