PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014392t1
Common NameTCM_014392
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 615aa    MW: 66864.7 Da    PI: 8.713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014392t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.9e-05296319225
                       HHHHHHHHHHHHHHHHHHHHHHHC CS
               HLH   2 rrahnerErrRRdriNsafeeLre 25 
                       r +h++ E+rRR++iN++  +L++
  Thecc1EG014392t1 296 RSKHSATEQRRRSKINDRPVKLKS 319
                       889**************9888876 PP
2HLH24.26e-083313631955
                       HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Thecc1EG014392t1 331 RFQMLRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 363
                       6999*******9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-21291384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.424294362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-12296367No hitNo description
SMARTSM003531.3E-4300368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-10331383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5331363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MELPQSRPFG AEGRKSTHDF LSLYSHPSVQ QDPRPPAQGG YLKTHDFLQL ERLGKTSAKE  60
ETPVEVATAE KPPPPAPPPS VEHILPGGIG TYSISHISYF NPRVPKAEGA IYNVAQGSNT  120
ERNDENSNCS SYAGSGFTLW EESAGKKGKT GKENAGETPV FGTAGIINPH AISTVKFVFH  180
LICIRMQRSI AMISEAAGKV GQWATSSLER ASQSSTNNHR NSFSSLSSSQ PSSKQKSQSF  240
MEMIKSAKGS AQDDDFEEDE DFVLKKESST TTHSKGELRV KVDGKSAPDQ KANTPRSKHS  300
ATEQRRRSKI NDRPVKLKSS LDAKIYPFFC RFQMLRDLIP HSDQKRDKAS FLLEVIEYIQ  360
FLQEKVHKYE GTYQGWSHEP SKLMPWRNNH RPTENYADQS QAINGVSAPA LVFSAKFDEK  420
NITVAPTIPG SAHNPIESDM STATTFRAID LSPGMMNKTM PFPVSLQPNF FASAQSTGAA  480
AQLVPRLPSD VANCASQPQS IACHSGSFTT DGALPSEKLK EQELTIEGGT ISISSVYSQG  540
LLNTLTQALQ TSGVDLSHAS ISVQIELGKR SSSRPTASAS TLKDREAPTA NQGTTRSRVG  600
CGEDSDQPLK KLKT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037673.20.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A061FYS10.0A0A061FYS1_THECC; Transcription factor BIM1, putative isoform 1
STRINGEOY221730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-114bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]