PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 532aa MW: 57434 Da PI: 6.724

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014374t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	36	95	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Thecc1EG014374t1 36 HQSLKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 95 6889****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	35	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-33	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MQDIHTIGGG RIFNGGGGGG GGGGDRRLRP HHHPNHQSLK CPRCDSLNTK FCYYNNYNLS 60 QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK AKRSKTKPSS ETTTAAAAAA AAVPPQPQQQ 120 HRDERKANSL SSSESSSLTA ANSNVAVTNN NNNNDNDNNN NNSSAGGTAE AVSAVTSHSN 180 LINVSESKFY GNPNSLGFEP GLLEQGSDCG IFSEIGSFTS LITSSNNETL SFGFSTVLNG 240 QGLEQGQWQQ QQKMMNIGGE EISGGLLDQT VQVELSNLHS RSEGEGSGGF GPLDWQGSGD 300 QGLFDLPNAV DQTYWSQSQW TDQDHPNLYL PQNSIALWLE NVPRHHETRK TVTIIANGGV 360 VDFDEEKRGE GKGWGNTMMW RLRWVVVVVV TGKLGMGGSR ACAEVVSPVS PPYGHTSHVS 420 VWVLESDVIL TISQGSLILS RDFLGSEFAV PHWHIMFAHI KCGFRTLDSR VRCGGWGGGG 480 NLGEGFDVVL LGILIFAMLG HLGVEHWCGP FLAETMIEAF MGLDLKFWVQ V*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MQDIHTIGGG RIFNGGGGGG GGGGDRRLRP HHHPNHQSLK CPRCDSLNTK FCYYNNYNLS  60
QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK AKRSKTKPSS ETTTAAAAAA AAVPPQPQQQ  120
HRDERKANSL SSSESSSLTA ANSNVAVTNN NNNNDNDNNN NNSSAGGTAE AVSAVTSHSN  180
LINVSESKFY GNPNSLGFEP GLLEQGSDCG IFSEIGSFTS LITSSNNETL SFGFSTVLNG  240
QGLEQGQWQQ QQKMMNIGGE EISGGLLDQT VQVELSNLHS RSEGEGSGGF GPLDWQGSGD  300
QGLFDLPNAV DQTYWSQSQW TDQDHPNLYL PQNSIALWLE NVPRHHETRK TVTIIANGGV  360
VDFDEEKRGE GKGWGNTMMW RLRWVVVVVV TGKLGMGGSR ACAEVVSPVS PPYGHTSHVS  420
VWVLESDVIL TISQGSLILS RDFLGSEFAV PHWHIMFAHI KCGFRTLDSR VRCGGWGGGG  480
NLGEGFDVVL LGILIFAMLG HLGVEHWCGP FLAETMIEAF MGLDLKFWVQ V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	16	GGRIFNGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021285636.1	0.0	LOW QUALITY PROTEIN: dof zinc finger protein DOF5.4
TrEMBL	A0A061FXE2	0.0	A0A061FXE2_THECC; OBF binding protein 4, putative
STRING	EOY22160	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	8e-57	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Thecc1EG014374t1
Entrez Gene	18604901

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]