PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014141t4
Common NameTCM_014141
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 398aa    MW: 44159.9 Da    PI: 8.7901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014141t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16210255555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++ +L++l+P+a      K +Ka++L +++eY+k+Lq
  Thecc1EG014141t4 210 HNLSERRRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 255
                       9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-19203265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-19204264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.727205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13210255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-16210259No hitNo description
SMARTSM003532.4E-17211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEMPCFNQFL YLKFRSNYEV AELTWENGQL AMHGLSGLLP TAPPTKPTWG RSNDTLESIV  60
HQATCHKQKQ NFNLLQHDQT RSNRSSIAAS SVGNWAESSS RLPVAAAAAL LKKRARSDSD  120
QCRKNLSGGI QEDRADRSAC ASASAAFCRD NDATMMTWAS HESPQSMKTK TADEDSSYHD  180
GSENQDEDRE TRGETGRSHS TRRSRAAAIH NLSERRRRDR INQKMRTLQK LVPNASKTDK  240
ASMLDEVIEY LKQLQAQVQM MSMRSMPQMM VPLGMQQHLQ MSLLARMGMG MLDINSMARF  300
PSQSLPPLMH PSPVTVPPTF LPPFVAPPMI PTREAAQANS DAISNASVPL PDPYCALLAQ  360
SVNMDLYSKM AALYRPQINQ TTQTASSPSR SNNVQED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKKRARS
2213218ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037470.20.0PREDICTED: transcription factor PIF7
TrEMBLA0A061G4L10.0A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGEOY219710.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-33bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]