PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014141t1
Common NameTCM_014141
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 423aa    MW: 46833.6 Da    PI: 8.3875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014141t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.5e-16235280555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++ +L++l+P+a      K +Ka++L +++eY+k+Lq
  Thecc1EG014141t1 235 HNLSERRRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 280
                       9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-19228290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-19229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.727230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-16235284No hitNo description
PfamPF000102.8E-13235280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-17236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNQCVVPNWN LKHQRQEQVE EEGNRSSHVL NSSNAHLVPM SNYEVAELTW ENGQLAMHGL  60
SGLLPTAPPT KPTWGRSNDT LESIVHQATC HKQKQNFNLL QHDQTRSNRS SIAASSVGNW  120
AESSSRLPVA AAAALLKKRA RSDSDQCRKN LSGGIQEDRA DRSACASASA AFCRDNDATM  180
MTWASHESPQ SMKTKTADED SSYHDGSENQ DEDRETRGET GRSHSTRRSR AAAIHNLSER  240
RRRDRINQKM RTLQKLVPNA SKTDKASMLD EVIEYLKQLQ AQVQMMSMRS MPQMMVPLGM  300
QQHLQMSLLA RMGMGMLDIN SMARFPSQSL PPLMHPSPVT VPPTFLPPFV APPMIPTREA  360
AQANSDAISN ASVPLPDPYC ALLAQSVNMD LYSKMAALYR PQINQTTQTA SSPSRSNNVQ  420
ED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141LKKRARS
2238243ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037470.20.0PREDICTED: transcription factor PIF7
TrEMBLA0A061FXG30.0A0A061FXG3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY219710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-35bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]