PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG013860t1 | ||||||||
Common Name | TCM_013860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 613aa MW: 66371.4 Da PI: 7.443 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 267 | 326 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Thecc1EG013860t1 267 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 326 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 252 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 260 | 328 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.461 | 262 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 267 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-27 | 268 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MEEDLIKRSD HGGAVKEEKR ADSSGDEEAA TGSREEVVAK VGNKRVYRED DDRKPSSPAQ 60 KDLSSSKQVS VKADTQRFST EPDSMASSSS RKEQDSQLES AKAEMGEVRE ENQRLKMYLN 120 RIMKDYQSLQ MQFYDIVRQD AKRSTATTNN DHQEVEEPEL VSLTLGRFSS DSKTDDKNKT 180 SSQGKEDERG KQGLSLGLDY KFEASKSDVD EPNPSPTNSS QEPKEEETWP PSKVLKTMRS 240 GDDEILQQNP VKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP 300 VRKQVQRCAE DMSILITTYE GTHNHPLPMS ATAMASTTSA AVSMLLSGSS SSSQPGSSIP 360 STANTIPANL QGLNFYLSDN SNSKFYLPNS SLSASSSHPT ITLDLTSTLS SSSFPFNKFS 420 SAYSTTARYP STSLSFGSSE SNTVSWGNGL LSYGSTQPYM KNQIGALNIG RPKTMENIIY 480 QSFMQKNNLN PPHQPLPDTI AAATKAITAD PNFQSALAAA LTSIIGTGNN GGATPPTGDK 540 LGQELNWGEK TPPVTSSCSQ TVKGNGCATS FLNKSPSTTS QPGTLMFLPP SLPFSTPKSA 600 SASHGDTRNH SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 267 | 328 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 267 | 328 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037253.2 | 0.0 | PREDICTED: probable WRKY transcription factor 61 | ||||
TrEMBL | A0A061G420 | 0.0 | A0A061G420_THECC; WRKY DNA-binding protein 72, putative | ||||
STRING | EOY21754 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 4e-71 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG013860t1 |
Entrez Gene | 18604620 |
Publications ? help Back to Top | |||
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