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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG012489t1 | ||||||||
Common Name | TCM_012489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23710.2 Da PI: 7.3845 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.8 | 1.4e-18 | 36 | 77 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + e ksn +vtfskRr+g++KKA+EL++L +a++ +i++s++ Thecc1EG012489t1 36 QLEKKSNLHVTFSKRRKGLFKKASELCILSGAKIGIIVLSPS 77 6789************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-23 | 27 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.423 | 27 | 87 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-22 | 28 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 29 | 49 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-18 | 38 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 49 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 64 | 85 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLNQQKMTNQ CCGDGEEGKK KPAGKTKGRQ RIEIKQLEKK SNLHVTFSKR RKGLFKKASE 60 LCILSGAKIG IIVLSPSPRE KPFCFGHPDI DTVLDQYLSG NPAFDDQDYA ALTDLPGFEE 120 IDKQYEESLK ELEKEKKRGK EIEQAKNVEN NGGFWWDEAI DGMRVEELEA YMKAMEKLKK 180 NLILRASALM MANVMETVVQ ADHSYGFGGS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036631.1 | 1e-155 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A061FW87 | 1e-154 | A0A061FW87_THECC; Mads box protein, putative | ||||
STRING | EOY21132 | 1e-155 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG012489t1 |
Entrez Gene | 18604209 |
Publications ? help Back to Top | |||
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