PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012104t1
Common NameTCM_012104
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 320aa    MW: 35592.1 Da    PI: 4.9307
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012104t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-092632972155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  Thecc1EG012104t1 263 KWPYPTEADKVGLAEATGLDQKQINNWFINQRKRH 297
                       579*****************************885 PP
2ELK36.31.2e-12217238122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK+ LlrKYsgy+++Lk+EFs
  Thecc1EG012104t1 217 ELKEKLLRKYSGYISTLKHEFS 238
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-2186130IPR005540KNOX1
PfamPF037903.7E-2287128IPR005540KNOX1
SMARTSM012562.4E-21137188IPR005541KNOX2
PfamPF037911.7E-22141187IPR005541KNOX2
SMARTSM011881.5E-7217238IPR005539ELK domain
PROSITE profilePS5121310.755217237IPR005539ELK domain
PfamPF037891.7E-10217238IPR005539ELK domain
PROSITE profilePS5007112.455237300IPR001356Homeobox domain
SuperFamilySSF466896.42E-20238312IPR009057Homeodomain-like
SMARTSM003893.6E-12239304IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-28242302IPR009057Homeodomain-like
CDDcd000861.23E-12249301No hitNo description
PfamPF059203.0E-17257296IPR008422Homeobox KN domain
PROSITE patternPS000270275298IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEELYGFHSS ATTAVYSMDT QPAADNMLSP PGNYPAGFPS HTAAATAFAE HMFGSGQLLS  60
GSSGISDADS MVAEIQRGGC EEEVSSAIRA KIASHPLYPK LLQAYIDCQK VGAPPEIAKM  120
LDEISGESDV CKRTALVPTC LGADPELDHF METYCDLLLK YKSDLSKPFD DATTFLNNIK  180
TQLSHLCNDE AAGSSEDDFS GGEMEALEDY QINEDRELKE KLLRKYSGYI STLKHEFSKK  240
KKKGKLPKEA RQILLDWWNV HYKWPYPTEA DKVGLAEATG LDQKQINNWF INQRKRHWKP  300
SENMQIAVMD SLCGPFFHE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972386.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-116KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A061FU890.0A0A061FU89_THECC; KNOTTED1 homeobox gene 6
STRINGEOY207660.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-99KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]