PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011873t1
Common NameTCM_011873
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 350aa    MW: 38590.4 Da    PI: 6.7056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011873t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14163209354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Thecc1EG011873t1 163 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 209
                       79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-12163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-14164216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-15164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-5173212No hitNo description
Gene3DG3DSA:3.30.70.2603.6E-4245295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGKKEEDQG ECSQAIHNIQ GYQEQLLIQQ HQQMQQHHHQ QQNNDLFGGT RGGLIFPEVS  60
PILPWSLPPV HSFNPAHFNG NQVRDHDPFL VPPPPSSYGA LFNRRAPALQ FAYDGPSTDH  120
LRILSDTLGP VVQPGSAPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL  180
AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEIDELT VDTSDEDGKF  240
LIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VKNVLFITGE EDSSSSGDQQ  300
QQQQQYSVSS IQEALKAVME KTSGDESSAG SVKRQRTNIS ILEHSGQNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514271e-156KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046318.10.0PREDICTED: transcription factor bHLH30
RefseqXP_017969969.10.0PREDICTED: transcription factor bHLH30
RefseqXP_017969970.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y11e-110BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A061EB140.0A0A061EB14_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY021500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]