PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 389aa MW: 42594.1 Da PI: 8.1556

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011857t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	222	277	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Thecc1EG011857t1 222 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 277 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.641	219	279	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-28	220	280	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.76E-18	220	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-27	222	277	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	224	275	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MINMDYAKKM RRCHEYVEAL EEERRKIQVF QRELPLCLEL VTQAIEACKK EISGGSTTTD 60 YMQGQSECSE QTSSDGPVLE EFIPIKRSSD CSEEDDEQES RKSKDHDTNT KEKNVAAADK 120 KKSDWLRSVQ LWNNNQSPDP PLQEGAGKSG SAVEVKRNGG AFQPFHREKT VEKSVPSVGK 180 ANASATSTST TESGSRGGGG GEANNGNTNS KKEEKEGQPQ RKQRRCWSPE LHRRFLHALQ 240 QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPTVHNNAN AQAPQFVVVG 300 GIWVPPPEYA PMAATTASGE TASVTPTNGI YTPVAAPLPK LPQPSGAIVQ RPQRSQSEER 360 GSHSEGRVHS NSPSTSSSTH TTTDSPLF*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MINMDYAKKM RRCHEYVEAL EEERRKIQVF QRELPLCLEL VTQAIEACKK EISGGSTTTD  60
YMQGQSECSE QTSSDGPVLE EFIPIKRSSD CSEEDDEQES RKSKDHDTNT KEKNVAAADK  120
KKSDWLRSVQ LWNNNQSPDP PLQEGAGKSG SAVEVKRNGG AFQPFHREKT VEKSVPSVGK  180
ANASATSTST TESGSRGGGG GEANNGNTNS KKEEKEGQPQ RKQRRCWSPE LHRRFLHALQ  240
QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPTVHNNAN AQAPQFVVVG  300
GIWVPPPEYA PMAATTASGE TASVTPTNGI YTPVAAPLPK LPQPSGAIVQ RPQRSQSEER  360
GSHSEGRVHS NSPSTSSSTH TTTDSPLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	222	275	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	222	275	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	222	275	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	222	275	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046296.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-112	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A061EBX6	0.0	A0A061EBX6_THECC; Myb-like transcription factor family protein, putative isoform 1
STRING	EOY02128	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	1e-105	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011857t1
Entrez Gene	18610532

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]