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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011811t1 | ||||||||
Common Name | TCM_011811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 37137.4 Da PI: 4.5582 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 123 | 170 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeIr+p + ++r++lg+++t eeAaka++a ++++ Thecc1EG011811t1 123 KPVGVRQRK-WGKWAAEIRHPLK---KTRIWLGTYDTLEEAAKAYDAKKLEF 170 789*****9.**********743...5********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.18E-23 | 122 | 170 | No hit | No description |
PROSITE profile | PS51032 | 19.335 | 123 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-17 | 123 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-13 | 123 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 124 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 125 | 170 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-22 | 126 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MPEPRKQSMD LSKSSKKTKK IQPILTEEET QMTRKVRVIF HDPYATDSSS SEDESEGSVA 60 RKAQKGKRVV REIKVPAFGL VPRLKPLDSE TSSQDSNTKT PARKKRAWSK TLEGKAPLSK 120 PKKPVGVRQR KWGKWAAEIR HPLKKTRIWL GTYDTLEEAA KAYDAKKLEF DALAAAAAAS 180 ASSDKTNEAA CSAVASHNGN SVPSTSEESE SLLSHTSPSS VLELDTSASV SVSNNNGDFE 240 DENNEGLDVN FANLPIPDFC FIDDPLLSGS VGQELNLDAE PADYLLVNDF GMMLEEYCSI 300 EDLSICGIEG DEPSELPDCD FSTDDFLFGE EVAPLNIACP * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046241.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_007046242.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_017971858.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A061EBQ6 | 0.0 | A0A061EBQ6_THECC; Integrase-type DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY02073 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2537 | 26 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011811t1 |
Entrez Gene | 18610492 |
Publications ? help Back to Top | |||
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