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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011795t3 | ||||||||
Common Name | TCM_011795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Whirly | ||||||||
Protein Properties | Length: 212aa MW: 23374.2 Da PI: 9.8071 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 137.9 | 4.7e-43 | 93 | 190 | 1 | 98 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 svyk+kaal+v++++p+f+ ldsg++k++r+G++ll++a+a+++r+ydW++kq+f+ls+te++ l++l+++esceffhdp++++s+eG a Thecc1EG011795t3 93 SVYKGKAALTVEPRAPEFVPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGALISLGARESCEFFHDPFKGKSEEGWHAFA 185 79**************************************************************************************88777 PP Whirly 94 lkveP 98 +++P Thecc1EG011795t3 186 NSIKP 190 77777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.0E-44 | 84 | 195 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.35E-43 | 86 | 211 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.7E-39 | 94 | 190 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLQLQFLSSP PLSAQSLNPN SNTNLLSSFS SLKSTQTHAF KLNPLSLTPK PSKFSLKCRQ 60 SEYFDQQQRF SNSSSTASPP ASGLPPRFYV GHSVYKGKAA LTVEPRAPEF VPLDSGAFKI 120 SREGFVLLQF APAAGVRQYD WSRKQVFSLS VTEIGALISL GARESCEFFH DPFKGKSEEG 180 WHAFANSIKP EEASRVNNAN PRYGGDYEWS R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 4e-59 | 81 | 180 | 2 | 101 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 4e-59 | 81 | 180 | 2 | 101 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 4e-59 | 81 | 180 | 2 | 101 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 4e-59 | 81 | 180 | 2 | 101 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021299611.1 | 1e-110 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 5e-72 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A061ECB4 | 1e-152 | A0A061ECB4_THECC; SsDNA-binding transcriptional regulator isoform 3 | ||||
STRING | EOY02045 | 1e-109 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 2e-62 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011795t3 |
Entrez Gene | 18610477 |