PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011712t1
Common NameTCM_011712
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ZF-HD
Protein Properties Length: 306aa    MW: 33432.9 Da    PI: 8.356
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011712t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67.2e-343994357
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                       v YkeClkNhAa+lGgha+DGCgEfmps++++ +++a+lkCaACgCHRnFHRr++
  Thecc1EG011712t1 39 VVSYKECLKNHAATLGGHALDGCGEFMPSPTATpTDPASLKCAACGCHRNFHRRDP 94
                      689******************************9********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-184096IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-284093IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1554293IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-314293IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.35E-18173246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28176247IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25185242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEFWSSASHN KTQSHSFRCK LSRNCTSNII YHQHHQEMVV SYKECLKNHA ATLGGHALDG  60
CGEFMPSPTA TPTDPASLKC AACGCHRNFH RRDPYDGPAF IHHLPPPTNP SSSPSPTHSP  120
GASPSPTHTP SSPVPYSYYS SAPHMLLALS TGYSGPLDEY HHHLNHSNPT VGRIENHNNS  180
NPSGRKRSRT KFSREQKEKM HAFAERLGWR MPKSEERLIE GFCNEVGVDR GVLKVWMHNN  240
KNTFSKKEIL AVGNLNIGSN NNSGSNEGNG NGNAGVSFDS NSDIHNNECS IQLHVSTING  300
SSSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-211862431875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971554.10.0PREDICTED: zinc-finger homeodomain protein 11
SwissprotQ9SEZ12e-76ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A061EA990.0A0A061EA99_THECC; Homeobox protein 34, putative
STRINGEOY019350.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-55zinc finger homeodomain 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]