PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 582aa MW: 62434.5 Da PI: 5.2815

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011413t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.3e-09	373	421	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Thecc1EG011413t1 373 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 421 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-17	368	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.49E-11	368	425	No hit	No description
PROSITE profile	PS50888	15.485	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	371	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	373	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	376	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MDIGEKDKYE LEKRNENHIN YQAPGMSPDW QFGGANLTST PMSLVSSDNP MAIGSSCASA 60 SVVDSFGTSL WEHTSNSQNL GFCDINAQNG ASSSNGMGIG KGGNSLRSTI DRPFDMSWNA 120 ASSMLRGGIF LPNATGILPQ SLSQLPADSA FIDRAARFSS FNGGNFSDMV NPFGIPESMG 180 LYTRGVGLMQ GPQDIFAISG MKSVSVVESE KSKLNSTEAS KDASLQVENR ATQESPLKNE 240 KKSESLVPSN EEAKQGNGGS GNESDEAEFS GGIGGQDEPS ALDDLSLEPS AKGLSSKKRK 300 RSVQDAEVDQ VKGGEPPVEA AKDNAENQKK GDQNQTTTIN KTTGKQGKQG SQASDPPKEE 360 YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL 420 QRQVEFLSMK LATVNPRLDF NIEGLLAKDI IQSRAGPSSL GFSPDMSVGY PSLHPSQPGL 480 VQAALPVMGN TSDVIRRTLS SQFTPMTGGY KEPNQLSNAW EDDLHNVVQM NYGAGAPSDS 540 QDVNGVSTIR SLESRTLILL LQVYSRQLHY GLLPATLILH S*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MDIGEKDKYE LEKRNENHIN YQAPGMSPDW QFGGANLTST PMSLVSSDNP MAIGSSCASA  60
SVVDSFGTSL WEHTSNSQNL GFCDINAQNG ASSSNGMGIG KGGNSLRSTI DRPFDMSWNA  120
ASSMLRGGIF LPNATGILPQ SLSQLPADSA FIDRAARFSS FNGGNFSDMV NPFGIPESMG  180
LYTRGVGLMQ GPQDIFAISG MKSVSVVESE KSKLNSTEAS KDASLQVENR ATQESPLKNE  240
KKSESLVPSN EEAKQGNGGS GNESDEAEFS GGIGGQDEPS ALDDLSLEPS AKGLSSKKRK  300
RSVQDAEVDQ VKGGEPPVEA AKDNAENQKK GDQNQTTTIN KTTGKQGKQG SQASDPPKEE  360
YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL  420
QRQVEFLSMK LATVNPRLDF NIEGLLAKDI IQSRAGPSSL GFSPDMSVGY PSLHPSQPGL  480
VQAALPVMGN TSDVIRRTLS SQFTPMTGGY KEPNQLSNAW EDDLHNVVQM NYGAGAPSDS  540
QDVNGVSTIR SLESRTLILL LQVYSRQLHY GLLPATLILH S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146811	1e-102	EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971624.1	0.0	PREDICTED: transcription factor bHLH49 isoform X1
TrEMBL	A0A061EGW0	0.0	A0A061EGW0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	EOY01544	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-136	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011413t1
Entrez Gene	18610150

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]