PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011094t1
Common NameTCM_011094
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 752aa    MW: 82918.5 Da    PI: 5.6086
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011094t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07150172427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       ++C ff++ G C  GdrC F Hgp
  Thecc1EG011094t1 150 VPCIFFQK-GLCLKGDRCAFLHGP 172
                       69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8034776IPR000571Zinc finger, CCCH-type
SMARTSM003560.00184875IPR000571Zinc finger, CCCH-type
PfamPF156631.5E-1148102No hitNo description
PROSITE profilePS5010310.61578104IPR000571Zinc finger, CCCH-type
SMARTSM003560.05580103IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5146172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4151172IPR000571Zinc finger, CCCH-type
PfamPF146080.025151171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MVAATQQQQQ QQLQQQQQQQ QQQQKQAAAA AAAVAGATKT SAEEEALKRN TDCVYFLASP  60
LTCKKGSECE YRHSEYARVN PRDCYFWLNG NCLNPKCGFR HPPLDGLLGT QVAASAGSSI  120
SSSQMAATPT AAAHTLYNQG ASSNSSKQAV PCIFFQKGLC LKGDRCAFLH GPTTNNKAPQ  180
PAAATPATEP HSLKKAFGAL ETSQLQKFPP SNVSKTVGVS LEGKPAPKVE AVSGRTGAGI  240
ERSVPCPAGS DEELPRHKGA NITQVVNGGS VGRSSRLHQA HASVEQSFHA GKDTDEFLRE  300
SSPGFDVLVD DELRDSDFYH GEDQYGGTRG HEGRNVNEYD IGRSANYDAM ADVDREMFRD  360
ARGYDSFDHV QGHYGWDQQR ASSERISLGP STLERRGYSV VDSPDPVEES DLRYHLSKHR  420
RFNGLRSVVS HDHAFENHEE ERNYRGSLRD SHHLPGHESS LSSRLRGRIK LPGRSLVNGT  480
DLHSEREIER GRNWGQLSPG KPQTSSHQGR LHDRIKGRVE GEYNNKEGRN FRGPRTRRDI  540
MDESNANFAG PKSLAELKVG KNTENKEQQS LGKRKNIEEY QQTEGDLSFE GPMPLSEILK  600
RKRQSGAAAS GSGIAPVNKE DINQKQSKES LIGSSTNTVV SPTLEEANKK EESKSTIAES  660
GKMEIVHGES SQLRNASKHE AEDGMIGDER MEDHELEADD QRDGDYYYEQ GDEGDYNYEE  720
GENVDPEEEY IEEEDGEDGD DFEKKLGVMF S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045327.20.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A061EFX70.0A0A061EFX7_THECC; CCCH-type zinc finger family protein, putative
STRINGEOY011590.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]