PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 420aa MW: 47228.8 Da PI: 9.8908

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG010375t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	251	293	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR++i++++++Lr l+Pk + K++ +iL ++eYI L Thecc1EG010375t1 251 VTERNRRKKIKDGLFKLRALVPKiS------KVDRTTILIDVIEYIGTL 293 57*******************66......*************766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.50E-7	242	290	No hit	No description
SuperFamily	SSF47459	3.01E-12	243	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.43	244	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-9	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	251	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-8	252	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MLGTPLLSVS FPFGGYKIAR NILICDSEIR IHGEVAMSNQ LKWVNHANAS GSRSSHDTMG 60 TQVLISVLGS LIELSISKHV RFFGLFSCQY FAISKHHRVS NNSIQCTLAP EVMTADSYAK 120 ANVDKWYLKT FGKDLHNLPF PISLSTFIPR IQAIPLVSDS NSQPSLDGSS SGSNPLIEHP 180 PFALGSAYIS QYEQLKQLIG TYHGTKRLRC SKNVFEQEAG FIVDRKNKTV KDIMRTTKHL 240 GKKNYHSKNL VTERNRRKKI KDGLFKLRAL VPKISKVDRT TILIDVIEYI GTLLEEEKKL 300 QEELRKIEEE DCKKSNAELK CAKLDRLHKD NMSAVTSGLA KMAKDKVHVE VNQITKREFL 360 IKLCYELKQG GFAKLMEGID SLGLQVIDAN VTTFNGKVLN IFKVEVRLSR WLTSIEIEC*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MLGTPLLSVS FPFGGYKIAR NILICDSEIR IHGEVAMSNQ LKWVNHANAS GSRSSHDTMG  60
TQVLISVLGS LIELSISKHV RFFGLFSCQY FAISKHHRVS NNSIQCTLAP EVMTADSYAK  120
ANVDKWYLKT FGKDLHNLPF PISLSTFIPR IQAIPLVSDS NSQPSLDGSS SGSNPLIEHP  180
PFALGSAYIS QYEQLKQLIG TYHGTKRLRC SKNVFEQEAG FIVDRKNKTV KDIMRTTKHL  240
GKKNYHSKNL VTERNRRKKI KDGLFKLRAL VPKISKVDRT TILIDVIEYI GTLLEEEKKL  300
QEELRKIEEE DCKKSNAELK CAKLDRLHKD NMSAVTSGLA KMAKDKVHVE VNQITKREFL  360
IKLCYELKQG GFAKLMEGID SLGLQVIDAN VTTFNGKVLN IFKVEVRLSR WLTSIEIEC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970458.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH90
TrEMBL	A0A061EDX1	0.0	A0A061EDX1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY00494	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	5e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG010375t1
Entrez Gene	18609472

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]