PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010340t1
Common NameTCM_010340
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 165aa    MW: 18566.6 Da    PI: 9.1412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010340t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09958255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +   +Er RR+++++ +++L  llP++   p  K+s  e + +A+ Y+k+Lq
  Thecc1EG010340t1  9 RINRCLIERERRRNMKTLYANLFALLPPQ---P-SKMSVPELVDQATAYVKHLQ 58
                      5566789*********************6...3.8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.28E-7662No hitNo description
SuperFamilySSF474591.83E-12774IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.985757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-10975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-71158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-51363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MENGLGSSRI NRCLIERERR RNMKTLYANL FALLPPQPSK MSVPELVDQA TAYVKHLQKK  60
LEKYKQMKVQ LEDKRATAYT IRPPVLNIRD LGSNLEVHLI TGLNMEFALS DFISILQEEG  120
AEIVSATCHH TGDRAIYTIL SQAIYPRIGI ATSSVHERLT SLIC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044631.21e-119PREDICTED: transcription factor bHLH36
TrEMBLA0A061E7401e-118A0A061E740_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY004631e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-29bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]