PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 251aa MW: 27815.7 Da PI: 6.9933

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG010176t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Thecc1EG010176t1 81 FECQYCFKEFANSQALGGHQNAH 103 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.22E-6	76	108	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	76	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.406	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010026	Biological Process	trichome differentiation
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEMDASSLIS QTCDGENGYS PAASCVEKKL RLFGFELNPS KNNDNSLKSS AEGDESVNSS 60 STRETPTKEK SSTGETDDKK FECQYCFKEF ANSQALGGHQ NAHKKERMKK KRLQLQAKRA 120 SINCYLQPFQ NSLGFSYQGS TPWYYDSSCY SAPEITLYEE SQISFNQYEH DAHLNGSQPS 180 KWYALPSQMI PFQQDSSMFT LTHADRSREN RPVGLKPSAL PSSKQSCKSL DLQLGLSLQS 240 TIQSSSGSGI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007044496.1	0.0	PREDICTED: zinc finger protein 5
TrEMBL	A0A061E6R5	0.0	A0A061E6R5_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	EOY00328	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7325	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	1e-21	zinc finger protein 5

Link Out ? help Back to Top
Phytozome	Thecc1EG010176t1
Entrez Gene	18609363

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]