PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 320aa MW: 35973.6 Da PI: 4.3133

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG009970t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	85	139	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+ Thecc1EG009970t1 85 KKRRLTATQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKN 139 56689***********************************************995 PP
2	HD-ZIP_I/II	126.6	1.1e-40	85	174	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ ++L ke+e+L++e+ Thecc1EG009970t1 85 KKRRLTATQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDELKTDYDNLLKEKEDLENEV 174 9*************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-19	75	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.443	80	140	IPR001356	Homeobox domain
SMART	SM00389	8.6E-18	83	144	IPR001356	Homeobox domain
CDD	cd00086	1.04E-17	85	141	No hit	No description
Pfam	PF00046	7.4E-16	85	138	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-19	87	140	IPR009057	Homeodomain-like
PRINTS	PR00031	4.9E-6	111	120	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	115	138	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-6	120	136	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-15	140	181	IPR003106	Leucine zipper, homeobox-associated
Gene3D	G3DSA:1.20.5.370	9.7E-4	141	176	IPR014751	DNA repair protein XRCC4, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006302	Biological Process	double-strand break repair
GO:0006310	Biological Process	DNA recombination
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEGGKICGSS NMNALIHSEQ LSCSSEVMES LWIPSSTSAL RGQKPIINYE NVNGVETTDM 60 LFFQPLDKEE SGDDDFHGSY RPPAKKRRLT ATQVQFLERS FEVENKLEPE RKVQLAKELG 120 LQPRQVAIWF QNRRARFKNK QLEKDYDSLK ASYDELKTDY DNLLKEKEDL ENEVLALKEK 180 LLNGEEGMEN SGSLDAINSS NAESKKPNCD TSPENVSRVP SPACKQEEAC SAKSDVFDSD 240 SPHYTDGNHS SLIEPADSSN AFEPDQSDFS QDEEDNLSKS LLHPPFFPKF EVDCYYDAPA 300 SSCNFALPVE DQSFWSSLY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARFKNKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007044376.2	0.0	PREDICTED: homeobox-leucine zipper protein HAT5 isoform X1
TrEMBL	A0A061E6H9	0.0	A0A061E6H9_THECC; Homeobox-leucine zipper protein HAT5, putative isoform 1
STRING	EOY00208	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-38	homeobox 1

Link Out ? help Back to Top
Phytozome	Thecc1EG009970t1
Entrez Gene	18609281

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]