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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Thecc1EG009901t1 |
Common Name | TCM_009901 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family |
CO-like |
Protein Properties |
Length: 441aa MW: 48801.7 Da PI: 6.5835 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Thecc1EG009901t1 | genome | CGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 30.1 | 1e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k+++++C ++ +lC+ C ++ H+ H++v
Thecc1EG009901t1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
578*****************************667888888876 PP
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2 | CCT | 68 | 2.6e-23 | 384 | 427 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
Thecc1EG009901t1 384 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 427
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 441 aa
Download sequence Send
to blast |
MISTKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR 60 LKTASLQSSG HEAPLESFAP SWHKGFTRKA RTRRPTKASI HQKLKAEHTK RNSNPFPLVP 120 EIGADEISYE ENEEEQLLYR VPIFDPLVAK LCTSTTSNEA AVSAVGNDVE TADAAVSESK 180 AFLACNGQDA DGSHGLFPSE MDLAEFAADV ESLLGKGLEN ESFGMEDLGL KDSKEKYFRD 240 CSLGNGKVKI EDEESFEAVG ACHVDSEIDM AREPFKLNFS CDSPGNCGEE DELVKEEVTV 300 KSYEEYEEDT AKKKKRKILL SLNYESVITA WASQGSPWTS GGRPDFDPDE CWPDCMGTGG 360 TEVHHTYSDL IGMGAHQALG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK 420 GRFVKRASFL AGPAFPFVNK *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 311 | 316 | KKKKRK |
2 | 394 | 410 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-103 | B-box type zinc finger protein with CCT domain |