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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG009888t1 | ||||||||
Common Name | TCM_009888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 26115.9 Da PI: 8.6736 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.4 | 3.4e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ + Thecc1EG009888t1 4 SCNGCRVLRKGCSENCIIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIEAGPQHLRPAIFRSLLYEACGRVVNPVYGSVGMLWSGNWAQC 96 6******************************************************************************************** PP DUF260 89 qlkaelallke 99 q++++++l ++ Thecc1EG009888t1 97 QAAVDAVLKGS 107 ***99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.832 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKMSCNGCRV LRKGCSENCI IRPCLQWIKS PDSQANATLF LAKFYGRAGL LNLIEAGPQH 60 LRPAIFRSLL YEACGRVVNP VYGSVGMLWS GNWAQCQAAV DAVLKGSPIT HTSSSDSLAL 120 QPISPLKTYD IRHVSKEPRP ADIDKLKTRT RFKRSVNRSK RQVDSPSYDS WMSQLGNDDS 180 KDDESMFSVE SVEGSLVNQM KKVPALKFTS QIEESTDDVG LELTLGLVPT ALQPHQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585561 | 9e-52 | JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044347.1 | 1e-177 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 4e-87 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A061ED63 | 1e-176 | A0A061ED63_THECC; LOB domain-containing protein 42 | ||||
STRING | EOY00179 | 1e-176 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-89 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG009888t1 |
Entrez Gene | 18609259 |
Publications ? help Back to Top | |||
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