PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1782aa MW: 199997 Da PI: 5.1649

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008214t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Thecc1EG008214t2 28 KRKMKTASQLEILEKTYAMEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	9	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.51E-16	15	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.503	23	83	IPR001356	Homeobox domain
SMART	SM00389	7.3E-17	25	87	IPR001356	Homeobox domain
CDD	cd00086	3.13E-14	26	82	No hit	No description
Pfam	PF00046	2.1E-16	28	82	IPR001356	Homeobox domain
SMART	SM00571	4.6E-22	550	609	IPR018501	DDT domain
PROSITE profile	PS50827	16.82	550	609	IPR018501	DDT domain
Pfam	PF02791	2.4E-16	551	606	IPR018501	DDT domain
Pfam	PF05066	1.5E-15	732	800	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-7	951	992	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-13	1133	1205	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1782 aa Download sequence Send to blast
MDSGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPAQVV GVAGEEMGGG EAENEHGSDV 120 SSLFGPGLHL RRAVPIPGMA VPRYYEMTHS MAELELRAIT FVELQLGEPI RDDGPMLGME 180 FDPLPPGAFG APIGASTAVQ QKQPGQPFET KIYERLDTKA VKGSVRAVHE YQFLPEQPSV 240 RTETYERVAL SYHYGSPTDD PHARASSLST GCSFVHGNEK VPSGYGFSGQ MPNLNLLPQQ 300 SRQGHLLPTA SGEYDNCSRK NSLTNTTVDA IIGAHPISAL ESPFVSSDRR VNLDEDALRM 360 ERKRKSEEAR IAREVEAHEK RIRKELEKQD ILRRKREEQI RKEMERHDRE RRKEEERLLR 420 EKQREEERYQ REQRRELERR EKFLMKESIR AERMRQKEEL RKEKEAARLK AANERAIARK 480 LAKESMELIE DERLELMELA ASSKGLSSTL SLDFEILQNL DIFRDKLCVF PPKGVQLKRS 540 FSIEPWNSSE ESIGNLLMVW RFLITFADVV GLWPFTLDEL VQAFHDYDPR LLGEIHVALL 600 RSIIKDIEDV ARTPSTGLGA SQNNAANPGG GHLQIVEGVY AWGFDIRSWQ GHLNMLTWPE 660 ILRQFALSAG FGPQLKKRNI EQAYLRDENE GNDGEDIITN LRNGAAAENA VAIMQERGFS 720 NPRRSRHRLT PGTVKFAAFH VLSLEDSDGL TILEVAEKIQ KSGLRDLTTS KTPEASIAAA 780 LSRDTKLFER TAPSTYCVRS PYRKDPADAE AILSAARERI RVLKSGFVGE DAEGAERDED 840 SESDIAEDLE VDDLGAEINP KKEMLNSEGS SSCDAKTILG NEKEICEILE TPQGEVRNVC 900 KALSSPTAGG LDEVKYIDAP VEQSMDAAGI CNGAANAGLE DTEIDESKLG EPWVQGLMEG 960 DYSDLSVEER LNALIALISI AIEGNSIRVV LEERLEAANA LKKQMWAEAQ LDKRRMKEEF 1020 VLRTNFSSHM GNKMEPSLMM SSAECRQSPQ IISDRKNNES SVDLVVQQEC LNNPQNDQNY 1080 LNNVPSEGNM PIQDFSIGPD NLQYPQPGCA AERSRSQLKS YIGHKAEEMY VYRSLPLGQD 1140 RRHNRYWRFI TSASWNDPGC GRIFVELLDG RWRLIDTEEG FDTLLSSLDV RGVRESHLHA 1200 MLQKIEMSFK EAVRRNKLHV NMERQNGDTI KKEANEMASG PDWNVSFESP SSTVSGSDSD 1260 MSETSTSFSI ELCRNEIEKN DALKRYRDFE KWMWKECFSL SSFCATKYGR RRCKQLLGVC 1320 DSCFNIYFFE DNHCPSCHRT DIASRSMLNF SEHVAQCAKK LQLGPGFALD GLVISPLRIR 1380 LTKLQLALVE VSIPFEALQS AWTEGYRNFW GMKLYSSTTA EELLQVLTLL ESSITRDYLS 1440 SNFETTRELL SPSILSGGVG DDSTNLETVP VLPWIPKTTA AVALRLIEFD AAISYTLKQR 1500 AETHKGAGEC MKFPSKDAVV KNNQDHERMQ TTNRVEYLQE ASWVDVGIGF SGSGRGRGRG 1560 RGRGVTRGGR SQRRPTGSRS EFGKRITTTD NEGLVPVLGW KSRSRGRGGR KRGRRSARSR 1620 PKPAKRMVEI AGERENPKEI MEKSSRNLAT NTWNGDEVTR LKVRTADNAS SSERSEYNDE 1680 NGQATGDEYD YLAGEDYAGG FNGKADDVME GSEYNIDGDE DDDGEERDDI AEGEQGNFIV 1740 GGYINENSDE EEIRNGDDPE DSDPYVKQYG YSTEASSDFS E*

Sequence ? help Back to Top

Protein Sequence Length: 1782 aa Download sequence Send to blast

MDSGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV  60
QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPAQVV GVAGEEMGGG EAENEHGSDV  120
SSLFGPGLHL RRAVPIPGMA VPRYYEMTHS MAELELRAIT FVELQLGEPI RDDGPMLGME  180
FDPLPPGAFG APIGASTAVQ QKQPGQPFET KIYERLDTKA VKGSVRAVHE YQFLPEQPSV  240
RTETYERVAL SYHYGSPTDD PHARASSLST GCSFVHGNEK VPSGYGFSGQ MPNLNLLPQQ  300
SRQGHLLPTA SGEYDNCSRK NSLTNTTVDA IIGAHPISAL ESPFVSSDRR VNLDEDALRM  360
ERKRKSEEAR IAREVEAHEK RIRKELEKQD ILRRKREEQI RKEMERHDRE RRKEEERLLR  420
EKQREEERYQ REQRRELERR EKFLMKESIR AERMRQKEEL RKEKEAARLK AANERAIARK  480
LAKESMELIE DERLELMELA ASSKGLSSTL SLDFEILQNL DIFRDKLCVF PPKGVQLKRS  540
FSIEPWNSSE ESIGNLLMVW RFLITFADVV GLWPFTLDEL VQAFHDYDPR LLGEIHVALL  600
RSIIKDIEDV ARTPSTGLGA SQNNAANPGG GHLQIVEGVY AWGFDIRSWQ GHLNMLTWPE  660
ILRQFALSAG FGPQLKKRNI EQAYLRDENE GNDGEDIITN LRNGAAAENA VAIMQERGFS  720
NPRRSRHRLT PGTVKFAAFH VLSLEDSDGL TILEVAEKIQ KSGLRDLTTS KTPEASIAAA  780
LSRDTKLFER TAPSTYCVRS PYRKDPADAE AILSAARERI RVLKSGFVGE DAEGAERDED  840
SESDIAEDLE VDDLGAEINP KKEMLNSEGS SSCDAKTILG NEKEICEILE TPQGEVRNVC  900
KALSSPTAGG LDEVKYIDAP VEQSMDAAGI CNGAANAGLE DTEIDESKLG EPWVQGLMEG  960
DYSDLSVEER LNALIALISI AIEGNSIRVV LEERLEAANA LKKQMWAEAQ LDKRRMKEEF  1020
VLRTNFSSHM GNKMEPSLMM SSAECRQSPQ IISDRKNNES SVDLVVQQEC LNNPQNDQNY  1080
LNNVPSEGNM PIQDFSIGPD NLQYPQPGCA AERSRSQLKS YIGHKAEEMY VYRSLPLGQD  1140
RRHNRYWRFI TSASWNDPGC GRIFVELLDG RWRLIDTEEG FDTLLSSLDV RGVRESHLHA  1200
MLQKIEMSFK EAVRRNKLHV NMERQNGDTI KKEANEMASG PDWNVSFESP SSTVSGSDSD  1260
MSETSTSFSI ELCRNEIEKN DALKRYRDFE KWMWKECFSL SSFCATKYGR RRCKQLLGVC  1320
DSCFNIYFFE DNHCPSCHRT DIASRSMLNF SEHVAQCAKK LQLGPGFALD GLVISPLRIR  1380
LTKLQLALVE VSIPFEALQS AWTEGYRNFW GMKLYSSTTA EELLQVLTLL ESSITRDYLS  1440
SNFETTRELL SPSILSGGVG DDSTNLETVP VLPWIPKTTA AVALRLIEFD AAISYTLKQR  1500
AETHKGAGEC MKFPSKDAVV KNNQDHERMQ TTNRVEYLQE ASWVDVGIGF SGSGRGRGRG  1560
RGRGVTRGGR SQRRPTGSRS EFGKRITTTD NEGLVPVLGW KSRSRGRGGR KRGRRSARSR  1620
PKPAKRMVEI AGERENPKEI MEKSSRNLAT NTWNGDEVTR LKVRTADNAS SSERSEYNDE  1680
NGQATGDEYD YLAGEDYAGG FNGKADDVME GSEYNIDGDE DDDGEERDDI AEGEQGNFIV  1740
GGYINENSDE EEIRNGDDPE DSDPYVKQYG YSTEASSDFS E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1554	1563	RGRGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971056.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A061EB47	0.0	A0A061EB47_THECC; Homeodomain-like transcriptional regulator, putative isoform 2
STRING	EOX99523	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thecc1EG008214t2
Entrez Gene	18608772

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]