PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007806t1

Common Name

TCM_007806

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 446aa MW: 49737.6 Da PI: 5.1908

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007806t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	293.5	5.4e-90	44	439	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ f++AL ++ +r ++++++ s+ +++ ++ l ++++ P+++f+ Thecc1EG007806t1 44 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWFLKALISKASRVCPTTMNFHGGSTFQRRLMTVI--ELAGYVDLLPWHRFG 134 689*************************************************9999999887777764333332..33459****** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181 + + N+aI +av g +vHi+Df+i++++QWp+L++aLa+Rpegp slRiT+ + ++ + ++ee+g+rLa+fA+ +vpfef+v+ Thecc1EG007806t1 135 FCASNSAIFKAVRGYPKVHILDFSITHCMQWPTLIDALAKRPEGPSSLRITVPSYRPPVppmLNVSTEEVGHRLANFAKFRDVPFEFHVIddp 227 ************************************************99977778888999*********************** PP GRAS 182 .................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesF 253 ++ l+ l++++L+++++Eal++n++ l +l de+ + rd +L+++k+l+P+++vvv++++d++++s+ Thecc1EG007806t1 228 sfpssgeilskessafqFESLLSHLTPSALDLREDEALVINCQNWLRYLSDERIGNTAhdssLRDVFLDIIKGLNPRIIVVVDEDSDLSAPSL 320 ***98888777766667778899999***************98865443333449************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 r++ +++y + fd+le+ lp++s++r +E +g++i+n+++ eg++r+er e+ +k +er+++a F +vp+ e++++++k ll +++ Thecc1EG007806t1 321 TSRITTCFNYLWIPFDALETFLPKDSSQRLEYESD-IGQKIENIISFEGFQRIERLESGAKLSERMKNASFFSVPFCEETVTEVKFLLDEHA- 411 *******************************.****************************************************. PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 g+ ++ee++ l+l+Wk+++ v+++aW+ Thecc1EG007806t1 412 SGWGMKEEEDMLILTWKGHKSVFATAWT 439 899**********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.369	17	420	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-87	44	439	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MKTEVRGNGA SISLQNPSLF NTPQSSITGA LRGCLGSLDG ACIEKLLLHC ASALESNDVT 60 LAQQVMWVLN NVASSVGDPN QRLTSWFLKA LISKASRVCP TTMNFHGGST FQRRLMTVIE 120 LAGYVDLLPW HRFGFCASNS AIFKAVRGYP KVHILDFSIT HCMQWPTLID ALAKRPEGPS 180 SLRITVPSYR PPVPPMLNVS TEEVGHRLAN FAKFRDVPFE FHVIDDPSFP SSGEILSKES 240 SAFQFESLLS HLTPSALDLR EDEALVINCQ NWLRYLSDER IGNTAHDSSL RDVFLDIIKG 300 LNPRIIVVVD EDSDLSAPSL TSRITTCFNY LWIPFDALET FLPKDSSQRL EYESDIGQKI 360 ENIISFEGFQ RIERLESGAK LSERMKNASF FSVPFCEETV TEVKFLLDEH ASGWGMKEEE 420 DMLILTWKGH KSVFATAWTS TGLED*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MKTEVRGNGA SISLQNPSLF NTPQSSITGA LRGCLGSLDG ACIEKLLLHC ASALESNDVT  60
LAQQVMWVLN NVASSVGDPN QRLTSWFLKA LISKASRVCP TTMNFHGGST FQRRLMTVIE  120
LAGYVDLLPW HRFGFCASNS AIFKAVRGYP KVHILDFSIT HCMQWPTLID ALAKRPEGPS  180
SLRITVPSYR PPVPPMLNVS TEEVGHRLAN FAKFRDVPFE FHVIDDPSFP SSGEILSKES  240
SAFQFESLLS HLTPSALDLR EDEALVINCQ NWLRYLSDER IGNTAHDSSL RDVFLDIIKG  300
LNPRIIVVVD EDSDLSAPSL TSRITTCFNY LWIPFDALET FLPKDSSQRL EYESDIGQKI  360
ENIISFEGFQ RIERLESGAK LSERMKNASF FSVPFCEETV TEVKFLLDEH ASGWGMKEEE  420
DMLILTWKGH KSVFATAWTS TGLED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	2e-55	15	441	10	421	Protein SHORT-ROOT
5b3h_E	2e-55	15	441	10	421	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043377.1	0.0	PREDICTED: scarecrow-like protein 32
TrEMBL	A0A061EAD4	0.0	A0A061EAD4_THECC; GRAS family transcription factor
STRING	EOX99208	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17642	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-125	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG007806t1
Entrez Gene	18608552

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]