PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 334aa MW: 36724.5 Da PI: 4.6304

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007358t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.1	3.3e-15	189	225	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g++tLCnaCGl+++ k++ Thecc1EG007358t4 189 CHHCGISEklTPAMRRGPAGPRTLCNACGLMWANKET 225 *********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.738	54	89	IPR010399	Tify domain
SMART	SM00979	1.3E-6	54	89	IPR010399	Tify domain
Pfam	PF06200	6.5E-10	58	88	IPR010399	Tify domain
Pfam	PF06203	6.1E-15	122	163	IPR010402	CCT domain
PROSITE profile	PS51017	12.56	122	164	IPR010402	CCT domain
SMART	SM00401	8.4E-10	183	236	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.9E-13	187	226	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.95E-10	187	229	No hit	No description
CDD	cd00202	4.08E-12	188	242	No hit	No description
PROSITE pattern	PS00344	0	189	216	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	5.9E-13	189	225	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDTVNQRGLL ARPFGDEYDD GGLEGEEFSG PHRLVMNGVA SSVSHGNGVG GFVQATRTSE 60 LTIAFEGEVY VFPAVTPEKV QAVLLLLGGR GASTNVPSSE FLLQEKVKVV GGSSQDSKLS 120 RRIASLVRFR EKRNERCFEK KIRYTCRKEV AQRMHRKNGQ FASLKECYNS ADGSWDQSDG 180 TPESALRRCH HCGISEKLTP AMRRGPAGPR TLCNACGLMW ANKETPTDTK PSTMEPENSF 240 ANDDEEGSPE ETKPVHLDSV NHLIRSNEQE FAENSHPFPI QVVNSSVNLD DEDMQETLEE 300 LADASGSDFE IPSHFDEQVD IDDTNIGTEW PGT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042819.1	0.0	PREDICTED: GATA transcription factor 24 isoform X2
Swissprot	Q5Z4U5	9e-55	GAT20_ORYSJ; GATA transcription factor 20
TrEMBL	A0A061E143	0.0	A0A061E143_THECC; ZIM-like 1 isoform 4
STRING	EOX98647	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	3e-55	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG007358t4
Entrez Gene	18608193

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]