PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007324t1
Common NameTCM_007324
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20330.4 Da    PI: 10.0807
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007324t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsst kly+y+s
  Thecc1EG007324t1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTSKLYDYAS 59
                      8***********************************************86 PP
2K-box85.79.5e-29731561699
             K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +q+e+a L+++++ Lq  +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R kK+++l+++i+el +k + +++en +L kk++
  Thecc1EG007324t1  73 FWQREAASLRQQLQYLQDYHRKLMGEELSGLSVKDLQNLENQLEMSLKGVRMKKDQILTDEIKELNHKGHLIHQENLELYKKVD 156
                       69******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
CDDcd002657.91E-37265No hitNo description
SuperFamilySSF554556.41E-28266IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.28871161IPR002487Transcription factor, K-box
PfamPF014865.7E-2773155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TSKLYDYAST  60
RSDSLSHNPF LFFWQREAAS LRQQLQYLQD YHRKLMGEEL SGLSVKDLQN LENQLEMSLK  120
GVRMKKDQIL TDEIKELNHK GHLIHQENLE LYKKVDLIRQ ENTELQKKVL AQII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20165165MEF2C
5f28_B1e-20165165MEF2C
5f28_C1e-20165165MEF2C
5f28_D1e-20165165MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556651e-114KC155665.1 Gossypium hirsutum MADS box protein MADS70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971541.11e-106PREDICTED: MADS-box transcription factor 23
SwissprotQ6EP495e-83MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A061E0X61e-123A0A061E0X6_THECC; AGAMOUS-like 16
STRINGEOX986151e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-78AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]