PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007052t1

Common Name

TCM_007052

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 287aa MW: 32657.2 Da PI: 8.4127

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007052t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.6e-17	35	111	1	76
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++YA +GF vrk +++ ++g ++++f Cskeg+++e+++k ++++++++ ++r++Cka+++v ++k gkw Thecc1EG007052t1 35 EFYKAYACAMGFGVRKGGCRRN-KDGIEVMKHFACSKEGHKAEKREKlENRAQEPKRSSRIDCKANIRVILNKdIGKW 111 6******************9.666677899*****99998867888889************999877888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-14	35	111	IPR004330	FAR1 DNA binding domain
SuperFamily	SSF57756	5.44E-5	212	241	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MENKENNLLD AKYLHKLSKD DILGLEFDDL EDVYEFYKAY ACAMGFGVRK GGCRRNKDGI 60 EVMKHFACSK EGHKAEKREK LENRAQEPKR SSRIDCKANI RVILNKDIGK WIPLNLIMKR 120 WTKNAKDDAP AVVDDNVDPK YQTILRYASL SSHCNRLCHV ASQFVETFNK ARSEIASLTR 180 RYEEMCKVNT DGISNLTEHV RDPTRVKVKG KVGAKSEGKK KPRKCGNCRM EGHTRNKCPQ 240 LELTLCSLDS SSCLLDDNDV DVYERNKEIW PSQLGTLFGG DSSEEE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974464.1	1e-85	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061DZX4	0.0	A0A061DZX4_THECC; Uncharacterized protein
STRING	EOX98245	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	3e-11	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Thecc1EG007052t1
Entrez Gene	18607928

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]