PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006692t1
Common NameTCM_006692
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 346aa    MW: 38094.4 Da    PI: 6.8868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006692t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-0861108354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ + + +k+L
  Thecc1EG006692t1  61 LQKADREKLRRDRLNEHFLELGNALDPD----RPKNDKATILTDTLQLLKDL 108
                       56778********************997....79***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.55158108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-759112No hitNo description
Gene3DG3DSA:4.10.280.104.7E-1159131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1259127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-661108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-664114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDQLKNDAAA FVQSIQSSNP SIIEFRQPPI DPRVSSMTRI QPKSSQRVEG EAKDCVAARK  60
LQKADREKLR RDRLNEHFLE LGNALDPDRP KNDKATILTD TLQLLKDLTS QVTKLKAEYA  120
TLTEESRELT QEKNDLKEEK ASLKSDIDNL NIQYQQRVRT MFPWGTVDHS VVMAPPSYPF  180
PVPMAMPPPG AIAMHPSMQP FPFFGNQNPG VIHNPCSTFV PYMTPNTLIE QQSTQHVAPL  240
AQPGSQSHAS GKQDSKNKSS GESKVEKTVD SNDVATDLEL KTPGSTADQD LSSGQRKLKK  300
SLRKENSNTE GSYSSRCSSS HSEQDSSSNS IVGGRKADDQ DGGKD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041927.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT231e-97BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A061E6870.0A0A061E687_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOX977580.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-80bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]