PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 413aa MW: 46698.7 Da PI: 8.9806

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006357t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	235	282	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Thecc1EG006357t1 235 KDHIMAERKRREKLSQSFIALSAIVPGL-----KKMDKASVLADAIKYLKQLQ 282 6799**********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.745	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	235	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-17	236	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-16	237	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.13E-13	237	286	No hit	No description
SMART	SM00353	1.4E-14	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSFHIIYPVR LVGWWTIKQA RALKVGRKLV LVPALQEDFF DIRKALDYHY RDSIQQAPSV 60 RKWDTSMEIS SIRELPELGM DDPNLFSQWQ MNSVDELSIL PLAAAFGENL QQSFSNHNYP 120 AFNPKTSVEP SHNGIDRPVK QHKTNSWDSC KPDTDISNLQ AAFSPNTFYF ASSNHMNPTG 180 IVKPKEEAAC SKSMESFPSD ILISQNSFLG SQNYMLKACH GAKRVSTGNK ISQSKDHIMA 240 ERKRREKLSQ SFIALSAIVP GLKKMDKASV LADAIKYLKQ LQEKVKTLEE QTRKKTIESV 300 VFVKKSQLFA DSDDFSSDQN FSGPFDEPLP EIEARFCDKS VLIRIHCEKR KGLPEKIMSQ 360 IEKCHLTVIN SNVMTFGSSA LDITIVAQMD MEFCMAVKDL VKKLRSAFKL IM*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSFHIIYPVR LVGWWTIKQA RALKVGRKLV LVPALQEDFF DIRKALDYHY RDSIQQAPSV  60
RKWDTSMEIS SIRELPELGM DDPNLFSQWQ MNSVDELSIL PLAAAFGENL QQSFSNHNYP  120
AFNPKTSVEP SHNGIDRPVK QHKTNSWDSC KPDTDISNLQ AAFSPNTFYF ASSNHMNPTG  180
IVKPKEEAAC SKSMESFPSD ILISQNSFLG SQNYMLKACH GAKRVSTGNK ISQSKDHIMA  240
ERKRREKLSQ SFIALSAIVP GLKKMDKASV LADAIKYLKQ LQEKVKTLEE QTRKKTIESV  300
VFVKKSQLFA DSDDFSSDQN FSGPFDEPLP EIEARFCDKS VLIRIHCEKR KGLPEKIMSQ  360
IEKCHLTVIN SNVMTFGSSA LDITIVAQMD MEFCMAVKDL VKKLRSAFKL IM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	ERKRRE
2	241	246	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970242.1	0.0	PREDICTED: transcription factor bHLH18
TrEMBL	A0A061DWW0	0.0	A0A061DWW0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOX97289	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006357t1
Entrez Gene	18607307

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]