PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006116t1 | ||||||||
Common Name | TCM_006116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 1381aa MW: 157099 Da PI: 7.0098 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73 | 3.9e-23 | 214 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 DgynWrK Gq ++ g+++pr YYrC++ gC ++k+v+r +e+p ++ +tY+g+H+++ Thecc1EG006116t1 214 PDGYNWRKHGQTDIVGARYPRTYYRCAHLltvGCLATKQVQRVDENPMIFSVTYSGKHTCN 274 6***************************9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-22 | 211 | 274 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-21 | 212 | 275 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.851 | 213 | 276 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-26 | 213 | 275 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-21 | 215 | 273 | IPR003657 | WRKY domain |
SuperFamily | SSF52540 | 2.92E-5 | 539 | 774 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 9.5E-10 | 670 | 802 | IPR002182 | NB-ARC |
SuperFamily | SSF52058 | 2.95E-30 | 868 | 1062 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 6.5E-20 | 870 | 993 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 2.2E-9 | 890 | 949 | IPR001611 | Leucine-rich repeat |
SMART | SM00369 | 3 | 913 | 936 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 9.2 | 960 | 983 | IPR003591 | Leucine-rich repeat, typical subtype |
SuperFamily | SSF52058 | 2.95E-30 | 1175 | 1316 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 4.4E-8 | 1177 | 1321 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1381 aa Download sequence Send to blast |
MLSSFKFINY LSSDTNVPAG FWLVFNHTCR TKNLYLLLLV FFHREMESLV QKNLRKELKR 60 GMELARKLQL HLKASKEARE LHRQILSSQG KALSMLNRRT FSMTKPHSIA HSPSAHNGSP 120 HSDGFDLDFQ QQEFKVKDAS MKSETAESKS TIVASEVSKS PSFLCGSVQS KDSDYDFKDR 180 ELKVNEVSTK RKTMSSWTEL VPSDTDLGLG EPLPDGYNWR KHGQTDIVGA RYPRTYYRCA 240 HLLTVGCLAT KQVQRVDENP MIFSVTYSGK HTCNLASDVM PPRPPQILAH TDTACGVDGN 300 DKQDSKSNLQ SSVYNPHDQT CISSTELMSE LPTFGLNLNV FPEESSESYP VWKDFHGYQV 360 RKNWKLLNRK KDVLLLLSSY PMIMIDKFDS EKWITDVLAI MRDAKSTEKM LFGEKVAEYW 420 DVIMRLHDLS GSLQKLLNVP LMNDIEGVLP GDIVENLYRP ADADSRPLLE VEKIIISGKT 480 SKSRGSPSHS EGAAIEAENE LQPMPARCKI QIEETELSAK ETVPEEIFDS AVDLAVCQIL 540 KCISRGDIRC ITISGRDKKR VIEAIKHHQN IGSKFGYIIE FTVAEHQIVA KVHGVFHLQK 600 GFCLGKYSDS VEYSDNLCSP GILLLMEDDY NKNMNLDHST LPFSININKL LDQIHSDSRF 660 IIFTSKIAAD MEIRMEDHLL SWKLFFRIVG EGFLSPSIQQ IAACMVKECR GNLLAIILMA 720 RSLKKVTDDV QLWELAAQRL TMLPPSQIED IDNVLVNTLT FIWERMNNKT RHCIKLFTRY 780 PEGLAIHRSS VIQRWIWDSL VDTYDEGTHI LQSLVDAFLL NIVELNCVQL RREIYDVLVK 840 LLIPQMHPLY LMQGGLRLIK PPKEEEWDAK EIHLMDNKLY DLPESPKCPS LFALYLQKNL 900 DLMAVPSCFF THMPLLQILD LSHTSIKSLP ESLSSLVKLR ELLLKGCELF IQLPSHVGKL 960 KNLEKLDLDE TQIIDLPVEI GHLSKLKILR VSFYGYVNCS KTWSQRDTII HPGIISGLSE 1020 LIELSIDVDP DDERWNATVK AVIEEACNLK TLRQLNLYLP SIEILWKRRT GSTSLLRYPL 1080 PRFRFTVGNH KQQVISRVPE EVEAHFNNGD KCLKFINGKD IPNEMRTVLN HSTAFFLEGH 1140 ATAKSLSDFG IKNTRRLKFC LLTECNEVQT IIDCAEFSEE QTDALGNLQD LNIYYMKNLE 1200 SIWKGPVHKN CLARLKFLAL HKCPRLSTIF SPDLVANLAN LEELIVEHCP QLTSLVSLIG 1260 HASSNSAPQP NCFLPSLKRI SLLYVPNLVS ISSGLRIAPE LEKIGFYNCP KLKSLSTMEM 1320 SSDHLKGIKG ESRWWEALEW KNSEWGNRLD YLHSIFSPLL KERDVKAQLV EEGIMHHAST 1380 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-15 | 213 | 273 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970908.1 | 0.0 | PREDICTED: disease resistance protein At4g27190 | ||||
Refseq | XP_017970909.1 | 0.0 | PREDICTED: disease resistance protein At4g27190 | ||||
Refseq | XP_017970910.1 | 0.0 | PREDICTED: disease resistance protein At4g27190 | ||||
TrEMBL | A0A061DY27 | 0.0 | A0A061DY27_THECC; Uncharacterized protein | ||||
STRING | EOX96991 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 5e-29 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006116t1 |
Entrez Gene | 18607103 |
Publications ? help Back to Top | |||
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