PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006109t1 | ||||||||
Common Name | TCM_006109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 1450aa MW: 164460 Da PI: 6.9825 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 75.3 | 7.5e-24 | 296 | 356 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+nWrKYGqK++ +++fpr YYrC+++ gC ++k+v+r++edp +++ tY+g H+++ Thecc1EG006109t1 296 SDGCNWRKYGQKDILNARFPREYYRCAHRhtqGCFATKEVQREDEDPMFITATYKGMHTCT 356 6**************************998899**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-24 | 287 | 356 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.921 | 290 | 358 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-22 | 291 | 357 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 295 | 357 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-22 | 297 | 355 | IPR003657 | WRKY domain |
SuperFamily | SSF52540 | 7.96E-7 | 650 | 862 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 6.4E-11 | 767 | 892 | IPR002182 | NB-ARC |
SuperFamily | SSF52058 | 4.25E-25 | 957 | 1112 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.7E-13 | 957 | 1108 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 4.25E-25 | 1244 | 1395 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.2E-6 | 1253 | 1391 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1450 aa Download sequence Send to blast |
MVVHLILSFF FFFFSNRDME SWERKNVRNE LRQGRKLAKQ LQANLKRSSS EENPELVQKI 60 VSSFEKALSM LNCSTSSMAA KLQPIAHSSL ARDGSHQSKD PDHDIKKQEF KVKDFFMKRE 120 VTESQPKGLA TEMFKFPPPF SGSFSSAGNL EAFDGKAAEL KPIIIGTEFD HDFMEEHELK 180 VNETFNKSCS VKDESKPAGH AKVMFKSLSD YNLEKKKHTV GDASKKSAAG ESQPTEVEFK 240 KPKSSHSLGE SLPSKDSDYN FKEQELKVNE GSGKRNARRS WTVLVHSDMV QGELPSDGCN 300 WRKYGQKDIL NARFPREYYR CAHRHTQGCF ATKEVQREDE DPMFITATYK GMHTCTLAPD 360 LMPPGPPEIL APLDTVLGAD GNDKKDSQSN LQSSVHSPDN QTCISSTKLT SELPNLGLNL 420 NVFPEKSFKS YPTWKNFYEN EVRKNWKVLN RKKDVLLLLS SYPMIMIDKS DTDKWIIDVL 480 ATMRHVKSTE KILFGVGVAK HWPGMTTLQE LSGRLQKLLD VPLMNDIEGV LPVDLVENLY 540 RTTEADLRPL LEVEQNIISG KTSKSRGSAS NSEGAAMEAE KELQPMPAKC KTLVEDTELP 600 AKGTLNVPEE IFDLAIYLAV RQILKCINRG YIWCITISGR DKKRVLGAVK QHQDIVSEFG 660 YIIVFTVSED QSGANVHGVF HLQKGFWLGG CFDSVDLTHE YFDNLCSPGI LLLTEDDYDK 720 NMNLDQSTLP LLINLNKLVD HKHSDSRFII FTSKMATDME IRMEDHLLSW KLFCRIVGEG 780 LLSPSIQQIA ASLVKECRGN LLAIILTARS LEKVTDDVNL WELAVKRLTM LPPSQIEDTD 840 NVLINALTFI WERMNNKTRH CIKFFTWYPK GQKINRVSLI QHWIQDRLVD THDEGTNIIQ 900 NLVDTSLLNI VELNRVQLRR EIYDVLVNPL ILQMHPFYLL LGRARLIKPP EEEEWDAKVI 960 NLMDNKLSDL PESPSIKSLP ESLSSLVNLR ELLLKGCELF IRLPSHVGEL KNLEKLDLDE 1020 TQIIDLPAEI GQLSKLKILR VSFYGYMNCS KTRLRQDTII PPGTISGLSE LTELSIDVDP 1080 DDERWNATVK DIIEEACNLK TLRQLNLYLP NIEILWKRRT GSASLLHYPL PRFRFTVGYH 1140 KRQVISRVPE EVEAHFNKSN KCLKFVKGKD IPAEMRKVLN HSTAFFLEGH ATARSLSDFG 1200 IENTRLLKCC LLTECNGVKT IIDLSQGGGH SQVYTRGKGK SESLKFPEEQ TDALGNLQDL 1260 NIYYMKNLES IWKGPVHKHC LASLKFLALH KCPRLSTIFS LDLVANLDNL EELIVEHCPQ 1320 LTSLVSPTGH VSSNSTPQPN CFFPSLKRIS LLYVPNLVSI SSGLWIAPEL EKVGFYNCPK 1380 LKSLSAMEMS SDHLTRIKGE SHWWEALEWK NSEWGNPLDY LQSIFSPLIK ERDVKAQLAE 1440 EGIMHHAST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 297 | 355 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970777.1 | 0.0 | PREDICTED: uncharacterized protein LOC18607098 isoform X7 | ||||
Refseq | XP_017970778.1 | 0.0 | PREDICTED: uncharacterized protein LOC18607098 isoform X7 | ||||
TrEMBL | A0A061DY23 | 0.0 | A0A061DY23_THECC; Uncharacterized protein | ||||
STRING | EOX96986 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-24 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006109t1 |
Entrez Gene | 18607098 |
Publications ? help Back to Top | |||
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