PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006103t1 | ||||||||
Common Name | TCM_006103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 1532aa MW: 174365 Da PI: 6.1581 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.6 | 1.7e-25 | 359 | 419 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK++++++fpr+YYrC ++ gC+++k+v+r++edp+v +tY g+H+++ Thecc1EG006103t1 359 ADGYNWRKYGQKDIRNARFPRAYYRCEHRhsqGCKATKQVQRENEDPTVARVTYYGRHTCT 419 6**************************988889**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-26 | 353 | 419 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-23 | 357 | 420 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-35 | 358 | 420 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.7 | 360 | 421 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-24 | 360 | 418 | IPR003657 | WRKY domain |
SuperFamily | SSF52540 | 1.38E-6 | 711 | 928 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 4.2E-11 | 831 | 953 | IPR002182 | NB-ARC |
SuperFamily | SSF52058 | 3.33E-33 | 1020 | 1213 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.1E-24 | 1021 | 1209 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 2.8E-10 | 1040 | 1100 | IPR001611 | Leucine-rich repeat |
SMART | SM00369 | 2.4 | 1064 | 1087 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 3.5 | 1111 | 1134 | IPR003591 | Leucine-rich repeat, typical subtype |
Gene3D | G3DSA:3.80.10.10 | 2.9E-8 | 1322 | 1477 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 3.33E-33 | 1326 | 1487 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1532 aa Download sequence Send to blast |
MESWEHKNVT NELRQGRELA RQLQANLKRS SSEENPELVE KIVSSFEKAL SMLNCSTSSM 60 TAKLQPIAHS SLARDGSHQS KDSEHDIKEQ EFAFKDLFME SEVDQSMLEG VSAGSLLSMD 120 FDHPFKDREA LEGFFEYDFK APEFKVNYDV NKSEAAELKP TIVATEMSTS RQFHRGRIQR 180 KDFDYDFKEE QDLEVNEAFN KSAAGELQPT EVEFKKPKSS HYLGKSLPSK DSDYDFKEEQ 240 ELKVNETFNK SCSVKDETKP AGLANVMFKS LSDYKLEKQK LTVSDASKKS AAGEFQPTEV 300 EFKKPKSSHY LGESLPSKDS DYDFKEQELK ANEGYSKRKA RWSGTVSVHS DTVLGGPPAD 360 GYNWRKYGQK DIRNARFPRA YYRCEHRHSQ GCKATKQVQR ENEDPTVARV TYYGRHTCTL 420 APDLMPPKPP EILDPLDAVL GTDGNDKKDS QSNLQSSVHS PDNQSCISST ELTSELPNLG 480 LNLNVFPEKS FESYPMWKKF YENEVRKNWK VLNRKKDVLL LLSSYPMIMI DKSDTDKWII 540 DVVAIMRHVK STEKILFGVG VAKHLPGMTR LQELSGRMQK LLDVPLMNDI EGVLPVDLVE 600 NLYRPTEADL RPLLEVEQNI ISGKTSKSRG SPSNSEGAAM EPEKELQPMP AKCKTLVEDT 660 ELSAKGTLNA PEEIFDLAIY LAVCQILKCI NRGYIWCITI SGRDKKRVLE AIKQHQDIGS 720 YFGYIIVFTV SEDQSGANVH GVFHLQKGFW LGGCFDSVDL THEYFHNLCS PGILLLREDD 780 YDKNMNLDHS PLPFSINLSK LVDHKHSDSR FIIFTSEMAA DMEIRMEDHL LSWKLFCRIV 840 GEGLLSPSIQ QIAASLVKEC RGNLLAVILM ARSLKKVIDD VNLWELAFKR LTMLPPSQIE 900 DIDNVLINAL TFIWEHMNNK TRHCIKLCAW YPKGEKIDRV SLIQHWIQDC LVDTYDEGTN 960 IIQNLVDTFL LNIVELNRVQ LRREIYDVIV NPLILQMHPL YLMLGGARLI KPPEEEEWDA 1020 KVIHLMDNKL SDLPESPRSP SLIALYLQNN LDLMAIPSCF FKHMPLLQIL DLSHTSIKSL 1080 PESISSLVNL RELLLKGCEL LIRLPSHVGE LKNLEKLDLD ETQIVDLPAE IGHLSKLKIL 1140 RVSFYRYMNC SKTRLQQDTI IPPGTISGLS ELTELSIDVD PDDERWNATV KAIIEEACDL 1200 KTLRQLNLYL PNIEILWKRR TGSTSLLHYP LPRFRFIVGY YKQQVVSRVP EEVEAHFNKG 1260 DKCLKFVKGK DIPAEMRMAL NHSTAFFLEG HATARSLSDF GIENTRQLKF CLLTECNEVQ 1320 TIIDCSEFPE EQMDALGNLQ DLTIYYMKNL VSIWRGLVHK RCLASLKFLA LHKCPKLSII 1380 FSPDLVANLA NLEELIVEHC PQLTSLVSLI GHASSSSAPQ PNCFLASLKR ISLLYVPNLV 1440 SISSGLRIAP ELEKVGFYNC PKLKSLSVME ISSENLKVIK GESRWWEALE WKNSEWGNRL 1500 DYLHSIYSPL IKERDVKVQL VEEGIMHQAS T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-20 | 360 | 418 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970775.1 | 0.0 | PREDICTED: uncharacterized protein LOC18607098 isoform X5 | ||||
TrEMBL | A0A061DVZ0 | 0.0 | A0A061DVZ0_THECC; Uncharacterized protein | ||||
STRING | EOX96984 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 4e-26 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006103t1 |
Entrez Gene | 18607096 |
Publications ? help Back to Top | |||
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