PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006022t2

Common Name

TCM_006022

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 818aa MW: 93995.2 Da PI: 7.8745

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006022t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.7	2.6e-25	94	202	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdgk 75 +fY+eYAk vGF++ +++s++s+ +g++++++fvC+++g+++e+ +++ r +r+ ++t+Cka ++vk+++dg+ Thecc1EG006022t2 94 SFYKEYAKFVGFTTIIKASRRSRISGKFIDAKFVCTRYGNERESGGVetpepvpcadiattipvkKKRGRVNRSWSKTDCKAGMHVKRRQDGR 186 5*************************************999987789*********998888889****************** PP FAR1 76 wevtkleleHnHelap 91 w v ++ +eHnH+++p Thecc1EG006022t2 187 WIVRSFIKEHNHDIFP 202 **********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-23	94	202	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-33	318	411	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	598	634	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.6E-7	601	628	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.8E-6	609	636	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MVPTGIDLEL PSGEYHKEDN RPNVNINMME GGDGRHDRGR VSGNDEGNGG RNVGVAVVDA 60 GPRAYTGREI NLNSVKNFEP HDGMEFESKE EAFSFYKEYA KFVGFTTIIK ASRRSRISGK 120 FIDAKFVCTR YGNERESGGV ETPEPVPCAD IATTIPVKKK RGRVNRSWSK TDCKAGMHVK 180 RRQDGRWIVR SFIKEHNHDI FPDQAYFSGG HRNLGLGNSN VHTLHGRTKK MYVSMSRQFG 240 AHKKLESHKG GDTNRLRSSQ LLGLEEGDVK ALLDHFLYMQ DENPNFFYSI DLNEEQRLRN 300 LFWVDAKGRL DYGYFYDVVF FDTTYITNEY KLPFVPFIGV NHHFQFLLLG CALVADETKL 360 TYAWLMRAWL RAMGRRAPKV ILTDHDKALK EAIAEVFPDS RHCFCLWHIV SKIPEKLSYV 420 MGQHENFMTK FDECVFKSYT DEQFEKKWWE LVDGFNLKND IWFQSLYEDR QQWVPAYMRG 480 ILLAGISTMQ RSDSVSSLFD KHLQRKTTLK EFLDQYKTIL REKSEEEAKA DFETWHKPPQ 540 LKSPSLFEKQ MSPLYTHAIF KKFQVEVLGG IACHPRKESE QGGTKTFKVQ DFEKNQDFIV 600 VWNEATSDIS CLCRGFEFNG FPCRHILIIL QLSGVQSIPS QHILKRWTKD AKSRQTTGEE 660 SDVLETRMQR YNDLCQRAFK LGDEGSLSQG SYNIVLNALE EALRKCESVN YSIRGVTELM 720 SPQTQGSHHF EELNQSNSTS KAVKRINASQ KRQGYPEGEI SNSGMPDSWQ QMGQSNIRVP 780 SLECSYESQE SIRGMEQLNS RTPAIDSYFG AQQLVQGM

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MVPTGIDLEL PSGEYHKEDN RPNVNINMME GGDGRHDRGR VSGNDEGNGG RNVGVAVVDA  60
GPRAYTGREI NLNSVKNFEP HDGMEFESKE EAFSFYKEYA KFVGFTTIIK ASRRSRISGK  120
FIDAKFVCTR YGNERESGGV ETPEPVPCAD IATTIPVKKK RGRVNRSWSK TDCKAGMHVK  180
RRQDGRWIVR SFIKEHNHDI FPDQAYFSGG HRNLGLGNSN VHTLHGRTKK MYVSMSRQFG  240
AHKKLESHKG GDTNRLRSSQ LLGLEEGDVK ALLDHFLYMQ DENPNFFYSI DLNEEQRLRN  300
LFWVDAKGRL DYGYFYDVVF FDTTYITNEY KLPFVPFIGV NHHFQFLLLG CALVADETKL  360
TYAWLMRAWL RAMGRRAPKV ILTDHDKALK EAIAEVFPDS RHCFCLWHIV SKIPEKLSYV  420
MGQHENFMTK FDECVFKSYT DEQFEKKWWE LVDGFNLKND IWFQSLYEDR QQWVPAYMRG  480
ILLAGISTMQ RSDSVSSLFD KHLQRKTTLK EFLDQYKTIL REKSEEEAKA DFETWHKPPQ  540
LKSPSLFEKQ MSPLYTHAIF KKFQVEVLGG IACHPRKESE QGGTKTFKVQ DFEKNQDFIV  600
VWNEATSDIS CLCRGFEFNG FPCRHILIIL QLSGVQSIPS QHILKRWTKD AKSRQTTGEE  660
SDVLETRMQR YNDLCQRAFK LGDEGSLSQG SYNIVLNALE EALRKCESVN YSIRGVTELM  720
SPQTQGSHHF EELNQSNSTS KAVKRINASQ KRQGYPEGEI SNSGMPDSWQ QMGQSNIRVP  780
SLECSYESQE SIRGMEQLNS RTPAIDSYFG AQQLVQGM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971394.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A061E3M6	0.0	A0A061E3M6_THECC; FRS transcription factor family isoform 2 (Fragment)
STRING	EOX96877	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006022t2
Entrez Gene	18607030

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]