PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005925t1
Common NameTCM_005925
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 432aa    MW: 47453.5 Da    PI: 7.929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005925t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-11359404655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+ l P+      k  + a++L +AveYIk+Lq
  Thecc1EG005925t1 359 SIAERVRRTRISERMRKLQGLFPNM----EKQTNTADMLDMAVEYIKDLQ 404
                       689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.037353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-15356418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-10357408No hitNo description
Gene3DG3DSA:4.10.280.106.7E-14358415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8359404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSVLYSSNFK FPDGELRKKQ EFTDSSYYLQ QNHQHNAGLM RYRSAPGSFL ENLVNGGVTA  60
SAIGFEDYRD VRSSSPEMET FFMLSCNGSG NSSCHDMQEY GEKSVKQEES LPISQQNGCS  120
NSSEMMYQSL PVHSLANDNT VSVANSMESS FGLSSSLGLE NSMQAKPGNE NGSNLVRQSS  180
SPAEFFSNLG VDNGFNVIGK ASTFRACNGT NDETTSNGSG RLYNNHISYS SGPSSCSRHM  240
PRIPEVESES MGVSGPETGS LGNGNGSNGH FMSNLGTDSW NNASLSGLKR ARESDGDLFR  300
NLSRSQTQDY RDRSTALTHH LSLPRTCAEM AVVEKLWQFQ GSVPCKIRAK RGCATHPRSI  360
AERVRRTRIS ERMRKLQGLF PNMEKQTNTA DMLDMAVEYI KDLQKQVKTL TDTKAKCSCS  420
SKQKHYSNLS T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052582.20.0PREDICTED: transcription factor bHLH130
RefseqXP_017969747.10.0PREDICTED: transcription factor bHLH130
RefseqXP_017969748.10.0PREDICTED: transcription factor bHLH130
RefseqXP_017969749.10.0PREDICTED: transcription factor bHLH130
TrEMBLA0A061DVD70.0A0A061DVD7_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX967390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-63bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]