PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005639t1
Common NameTCM_005639
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 311aa    MW: 33788.1 Da    PI: 5.4444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005639t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18126175255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Thecc1EG005639t1 126 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 175
                       69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.604126183IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21126184IPR016177DNA-binding domain
PfamPF008471.3E-12126175IPR001471AP2/ERF domain
SMARTSM003802.5E-38126189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-32126184IPR001471AP2/ERF domain
CDDcd000181.29E-32127185No hitNo description
PRINTSPR003672.8E-10127138IPR001471AP2/ERF domain
PRINTSPR003672.8E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEESYKPPTP ICYMPITQNS SIPTTRTLAV MERDINIEND AHHNNSLSSS SVISTTVTSS  60
STSTSSSTSS SSTTFSVSGS NKSKKTSKNS VAPKGSKRAG DLENDSASNK KRHRSCDDDD  120
GSKHPTYRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE MAARAHDVAA LAIKGRSAYL  180
NFPELAKDLP RPAGTSPKDI QAAASQAAAS TFLKTRRCNI EAEAEAEAEV GPSQEELPVS  240
HLSQTSASDN VQESSSSPSI DDDDTLFDLP DLMIDATDRS DGFCSYSSTW QICAVDAGFR  300
LEEPFSWEYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18121183972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970720.10.0PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ74e-68ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A061DUB90.0A0A061DUB9_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOX963890.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]