PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 449aa MW: 48198.3 Da PI: 6.5804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005607t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.4e-05	296	319	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++s++ +Ka++L +++eY+k+Lq Thecc1EG005607t3 296 HNQSERTDKASMLDEVIEYLKQLQ 319 46899******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.521	265	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.71E-4	296	323	No hit	No description
SuperFamily	SSF47459	3.14E-6	297	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-6	297	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MSQCVPSWDL DDNPAIARHS LRSNSNSTAP DVPMLDYEVA ELTWENGQLA MHSLGPPRVP 60 AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRNVSL DGGRDELVPW FDHHRAAVAA 120 AAVASSSATM TMDALVPCSN RSEDRTTHVM ESIRGLGGTC VVGCSTRVGS CSGPTGTQDD 180 GVLLTGKRAR EARVSVAPEW SSKDQNASAS ATFGTDSQHV TVDSYEKDFG VGFTSTSLGS 240 PENTSSPRPC TKATTADDHD SVCHSRPQRK AGEEDKRKET GKSSVSTKRS RAAAIHNQSE 300 RTDKASMLDE VIEYLKQLQA QVHMMSRMNI PPMMFPMTMQ QQLQMSMMAP MGMGMGMGMG 360 IGMGVMDMST MGRPNITGIS PVLPNPFVTM TPWDGSGDRL QAASAAVMPD PLSAFLACQS 420 QPITMDAYSR MAAMYQQMQH PPASSSKN*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MSQCVPSWDL DDNPAIARHS LRSNSNSTAP DVPMLDYEVA ELTWENGQLA MHSLGPPRVP  60
AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRNVSL DGGRDELVPW FDHHRAAVAA  120
AAVASSSATM TMDALVPCSN RSEDRTTHVM ESIRGLGGTC VVGCSTRVGS CSGPTGTQDD  180
GVLLTGKRAR EARVSVAPEW SSKDQNASAS ATFGTDSQHV TVDSYEKDFG VGFTSTSLGS  240
PENTSSPRPC TKATTADDHD SVCHSRPQRK AGEEDKRKET GKSSVSTKRS RAAAIHNQSE  300
RTDKASMLDE VIEYLKQLQA QVHMMSRMNI PPMMFPMTMQ QQLQMSMMAP MGMGMGMGMG  360
IGMGVMDMST MGRPNITGIS PVLPNPFVTM TPWDGSGDRL QAASAAVMPD PLSAFLACQS  420
QPITMDAYSR MAAMYQQMQH PPASSSKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393293	2e-48	GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007052181.2	0.0	PREDICTED: transcription factor UNE10 isoform X2
Swissprot	Q8GZ38	1e-102	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A061E238	0.0	A0A061E238_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3
STRING	EOX96337	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-100	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG005607t3
Entrez Gene	18614381

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]