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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Thecc1EG005458t1 |
Common Name | TCM_005458 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family |
MIKC_MADS |
Protein Properties |
Length: 244aa MW: 27810.8 Da PI: 9.3612 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Thecc1EG005458t1 | genome | CGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 100.2 | 8.1e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+
Thecc1EG005458t1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
79**********************************************95 PP
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2 | K-box | 100.8 | 1.9e-33 | 81 | 170 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
e+++++++qe++kLk+++e+Lqr+qRhllGedL++L++keLq+Le+qLe +l R++K+++++eq+e+l+kke++l + nk+L+ kle
Thecc1EG005458t1 81 LERETQNWYQEVTKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERQLGDLNKQLKLKLE 170
46789*********************************************************************************9987 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.571 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.41E-45 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-34 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-29 | 82 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.938 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009553 | Biological Process | embryo sac development |
GO:0009911 | Biological Process | positive regulation of flower development |
GO:0010094 | Biological Process | specification of carpel identity |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048455 | Biological Process | stamen formation |
GO:0048459 | Biological Process | floral whorl structural organization |
GO:0048509 | Biological Process | regulation of meristem development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0080060 | Biological Process | integument development |
GO:0080112 | Biological Process | seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GMTKTLERYQ RCCFTPQDNS LERETQNWYQ EVTKLKAKYE SLQRTQRHLL GEDLGPLNVK 120 ELQNLEKQLE GALALARQRK TQIMIEQMED LRKKERQLGD LNKQLKLKLE AEGQSLKTIQ 180 GLWSSGAAAE NSNFPLHPSH ANPMECDPEP VLQIGYHHFV QAEGSSVPKN MAGETNFIHG 240 WVI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 2e-22 | 90 | 173 | 22 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-22 | 90 | 173 | 22 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-22 | 90 | 173 | 22 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-22 | 90 | 173 | 22 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Motamayor JC, et al.
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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