PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005412t1
Common NameTCM_005412
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HD-ZIP
Protein Properties Length: 820aa    MW: 88809.8 Da    PI: 6.279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005412t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-21114169156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Thecc1EG005412t1 114 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 169
                       688999***********************************************999 PP
2START210.65.9e-663235471206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela++a++elvk+a+ +ep+W +s     e++n de+l++f++  +     + +ea+r++gvv+ ++  lve+l+d+  +W e+++    + +
  Thecc1EG005412t1 323 ELALAAMDELVKMAQTDEPLWIRSLeggrEILNHDEYLRTFTPCIGmkpggFVTEASRETGVVIINSLALVETLMDST-RWAEMFPcmiaRTS 414
                       5899**************************************9998999*****************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +v +++lpSg+++++++ng+skvtw
  Thecc1EG005412t1 415 TTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTW 507
                       **************************************************************999**************************** PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       veh++++++++h+l+r+l++sg+ +ga++wvatlqrqce+
  Thecc1EG005412t1 508 VEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 547
                       **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-2196171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-22101171IPR009057Homeodomain-like
PROSITE profilePS5007117.216111171IPR001356Homeobox domain
SMARTSM003899.9E-18112175IPR001356Homeobox domain
CDDcd000861.32E-18113171No hitNo description
PfamPF000461.4E-18114169IPR001356Homeobox domain
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PROSITE profilePS5084844.892314550IPR002913START domain
SuperFamilySSF559613.3E-34316547No hitNo description
CDDcd088754.88E-130318546No hitNo description
PfamPF018521.7E-57323547IPR002913START domain
SMARTSM002343.8E-51323547IPR002913START domain
SuperFamilySSF559615.22E-24575812No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MSFGGFLDNS SGGGGARIVA DIPYSNNMPT GAIAQPRLVS PSLAKNMFNS PGLSLALQQP  60
NIDNQGDGTR MGENFEGSVG RRSREEEHES RSGSDNMDGG SGDDQDAADN PPRKKRYHRH  120
TPQQIQELEA LFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT QLERHENSLL  180
RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ HLRIENARLK DELDRVCALA  240
GKFLGRPISA LATSIAPPMP NSSLELGVGS NGFGGLSTVP TTLPLGPDFG GGITNALPVA  300
PPNRPTTGVT GLDRSVERSM FLELALAAMD ELVKMAQTDE PLWIRSLEGG REILNHDEYL  360
RTFTPCIGMK PGGFVTEASR ETGVVIINSL ALVETLMDST RWAEMFPCMI ARTSTTDVIS  420
SGMGGTRNGA LQLMHAELQV LSPLVPVREV NFLRFCKQHA EGVWAVVDVS IDTIRETSGA  480
PTFVNCRRLP SGCVVQDMPN GYSKVTWVEH AEYEESQVHQ LYRPLLSSGM GFGAQRWVAT  540
LQRQCECLAI LMSSTVPTRD HTAITASGRR SMLKLAQRMT DNFCAGVCAS TLHKWNKLNN  600
AGNVDEDVRV MTRKSVDDPG EPPGIVLSAA TSVWLPVSPQ RLFDFLRDER LRSEWDILSN  660
GGPMQEMAHI AKGQDHGNCV SLLRASAMNA NQSSMLILQE TCIDAAGSLV VYAPVDIPAM  720
HVVMNGGDSA YVALLPSGFA IVPDGPGSRG PTSNGHVNGN GGGGGGRSQR VGGSLLTVAF  780
QILVNSLPTA KLTVESVETV NNLISCTVQK IKAALQCES*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051912.20.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A061DTE30.0A0A061DTE3_THECC; HD domain class transcription factor isoform 1
STRINGEOX960690.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]