PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005333t1
Common NameTCM_005333
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 1280aa    MW: 144078 Da    PI: 6.6039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005333t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000144674991855
                       HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++f  Lr+++P+ +        +Ka+iL+ +++Y+k+L+
  Thecc1EG005333t1 467 EKFLVLRSMVPSiS------EIDKASILKDTIKYLKELE 499
                       68899*******66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-5015190IPR025610Transcription factor MYC/MYB N-terminal
SMARTSM003538.4E-5458504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-8461516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-6462503No hitNo description
Gene3DG3DSA:4.10.280.102.6E-8466512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.40.101.9E-7698733IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.084701735IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.8E-4703736IPR002885Pentatricopeptide repeat
PfamPF015352.7E-4703730IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-7800933IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.676801835IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.4E-6806836IPR002885Pentatricopeptide repeat
PfamPF015354.6E-6806832IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.171871901IPR002885Pentatricopeptide repeat
PfamPF015350.42876902IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.155902936IPR002885Pentatricopeptide repeat
PfamPF015350.0013904932IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-710021052IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.40210041038IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001610071039IPR002885Pentatricopeptide repeat
PfamPF015351.3E-410071032IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.60710781108IPR002885Pentatricopeptide repeat
PfamPF015350.3710831106IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.61111091143IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-511111144IPR002885Pentatricopeptide repeat
PfamPF015352.9E-511121141IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-711201153IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.02611441179IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.93911801210IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-712461270IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.98512481279IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1280 aa     Download sequence    Send to blast
MANVVVNQEG VPENLRKQLA VAVRSIQWSY AIFWSLSATR QGVLQWGEGY YNGDIKTRKT  60
VQVMELKADK IGLQRSEQLR ELYESLLEGE IDQTKRPSAA LSPEDLSDAE WFYLVCMSFV  120
FNHGQGLPGR AFANGETIWL CNAQYADSKI FSRSLLAKTV VCFPYLGGVI ELGVTELVPE  180
DPSLLQHIKA SLLDFSKPVC SEKSSSAPHN ADDDRDPACV RVDHEIVDLL DLENLYSPTE  240
EIKFDQEKFN ELHENINENF NVSSPDECSN GCEQNHQMED SFMLEDVNGV ASQVQSWHFM  300
DDDFSNGVQI SINSSDCVSE AFANQEKAAI SSPKQGSVSH SHFKELQEGN HTKLSSLDLG  360
VRDDLHYRRT LSAILGTSNW LIESQGFHTS GYKSSFISWR KGEKANFHRP RVHQNIFKKI  420
LFAVPLMHSG SSLMSQKENG GKHCLGKLEN DDDEKGYLLP EKRREEEKFL VLRSMVPSIS  480
EIDKASILKD TIKYLKELEA RVEELESSMD SVDFEARPRR NCLDAMKQAS DNHENRKVEN  540
VKKSWINKRK ACDIDESHET GSEQSRVIPK DGLTSDVKVS IKELEVIIEI RCRSREFLLL  600
DIMDAINNLH LDAHTVQSST LEGVVIVTMK SKFRGAAIAP AGMIKQALQR VATRQKLFAE  660
ITHRTRNSPT RISVALSRYS TLCYRNPNHD DPVDPYADKD HVISWTSVLS KLVRQGQPEE  720
AIGLFKTMLM SNQRPNYVTI LSLVKAFDTL DWEALRMMVH GLVIKMGFES EPSVLTALIG  780
SYSVYGMGVC WSLFNQIPNK DVVLRSAMVS ACVKNGDYVE ALELFRRMQV LGLKANHVSI  840
VSILPACANL GALQLGREIH GFIIRRMICY VNTVQNSLVD MYAKCRSLQT AICVFNGMLK  900
KDLVSWRTLI RGYVENECGI KALDAFSKMQ RLSFFALDEF VVRDMIMAVL QSGESKIGSA  960
FHCYILKTGF LAFVSIATAL LQMYAKFSMV ASARNVFDHI SNKDVIAWNA MISAYAQTGL  1020
PFNAINTFRQ MLLMNEKPSE FSLVSLLQIC SLMASQEVSD KVGETIHAFV AKVGYSRNVY  1080
LSSALIDFYC RFGRVKQGKA LFDEVPTKDL ICWSSMINGY VLNGYGIEAL ETFANMLDCG  1140
IKPNDIIFLS VLSACSHCGL KNEGWNWFYS MKEKYGITPK LAHYACMVDL LSRQGHIEQA  1200
LHFVKKMPME PDKRIWGALL AGCRVSPGPI KIVEFVVERL STLDPQNSTH YYMILSDLYA  1260
EEGRGEDAKR LRRLVDENA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-52702120817332PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988661e-127KP698866.1 Gossypium hirsutum basic helix-loop-helix protein 123D (bHLH123D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280238.10.0uncharacterized protein LOC110413657
TrEMBLA0A061DV610.0A0A061DV61_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOX959660.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-166bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]