PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005064t1
Common NameTCM_005064
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 498aa    MW: 55306.2 Da    PI: 5.5119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005064t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12320365454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Thecc1EG005064t1 320 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 365
                       799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-5526208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17317378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-14319370No hitNo description
PfamPF000107.3E-10320365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16320381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFVIQSQQDW WAYAIFWQTS NDEHGRLFLT  60
WGDGHFQGTK DTSPKLGANI SNIPGLNNER RKVMKGIQAL IGDNHDIDMS MIDGTDITDA  120
EWFYVMSLTR SFSAGDGIPG KALSTGSLVW LTGAHELQFY NCERAREAQM HAIETLVCIP  180
TSCGVLELGS SEMIRENWGL VQQVKSVFGS DLIGLVPKQS NPNPNLTPGP IQFLDRNISF  240
ADIGIIAGVQ EEDASPDNRT KQENHNNQTK KDSTKPGQSS YVDSEHSDSD CPLLAMNNIE  300
KRTPKKRGRK PGLGRETPLN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVS  360
YINELKAKIE ELESQLQREC KKVKVEMVDA MDNQSTTTSV DQAARPSNSS SGTAGSGGLE  420
FDIKIMGNDA MIRVQSENVN YPSARLMIAL RDLEFQVHHA SMSCVNELML QDIVVRVPDG  480
LRTEEGLKSA LLRRLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-33252088192Transcription factor MYC3
4rqw_B9e-33252088192Transcription factor MYC3
4rs9_A9e-33252088192Transcription factor MYC3
4yz6_A9e-33252088192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.20.0PREDICTED: transcription factor bHLH14
TrEMBLA0A061DS370.0A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGEOX956140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.19e-91bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]